RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 KDM4CQ9H3R0 1056 aa13.01□□□□□ -0.33
LSM6-204ENST00000504181 DNAJC28Q9NX36 388 aa13.01□□□□□ -0.33
LSM6-204ENST00000504181 MARCH2Q9P0N8 246 aa13.01□□□□□ -0.33
LSM6-204ENST00000504181 PISDQ9UG56 409 aa13.01□□□□□ -0.33
LSM6-204ENST00000504181 TUBD1Q9UJT1 453 aa13.01□□□□□ -0.33
LSM6-204ENST00000504181 MED13LQ71F56 2210 aa13.01□□□□□ -0.33
LSM6-204ENST00000504181 APCP25054 2843 aa13.01□□□□□ -0.33
LSM6-204ENST00000504181 SHANK1Q9Y566 2161 aa13□□□□□ -0.33
LSM6-204ENST00000504181 AGRPO00253 132 aa13□□□□□ -0.33
LSM6-204ENST00000504181 KRT7P08729 469 aa13□□□□□ -0.33
LSM6-204ENST00000504181 PRLRP16471 622 aa13□□□□□ -0.33
LSM6-204ENST00000504181 TNNI1P19237 187 aa13□□□□□ -0.33
LSM6-204ENST00000504181 TRPC3Q13507 836 aa13□□□□□ -0.33
LSM6-204ENST00000504181 DEFB133Q30KQ1 61 aa13□□□□□ -0.33
LSM6-204ENST00000504181 TRIM69Q86WT6 500 aa13□□□□□ -0.33
LSM6-204ENST00000504181 ZNF276Q8N554 614 aa13□□□□□ -0.33
LSM6-204ENST00000504181 C12orf29Q8N999 325 aa13□□□□□ -0.33
LSM6-204ENST00000504181 ZNF548Q8NEK5 533 aaPredicted RBP13□□□□□ -0.33
LSM6-204ENST00000504181 C9orf43Q8TAL5 461 aaPredicted RBP13□□□□□ -0.33
LSM6-204ENST00000504181 LARP4BQ92615 738 aaKnown RBP13□□□□□ -0.33
LSM6-204ENST00000504181 SLC12A9Q9BXP2 914 aa13□□□□□ -0.33
LSM6-204ENST00000504181 SDCBP2Q9H190 292 aa13□□□□□ -0.33
LSM6-204ENST00000504181 FZD3Q9NPG1 666 aa13□□□□□ -0.33
LSM6-204ENST00000504181 CLIC5Q9NZA1 410 aa13□□□□□ -0.33
LSM6-204ENST00000504181 HMGXB4Q9UGU5 601 aa13□□□□□ -0.33
LSM6-204ENST00000504181 STRIP2Q9ULQ0 834 aa13□□□□□ -0.33
LSM6-204ENST00000504181 KIF3AQ9Y496 699 aa13□□□□□ -0.33
LSM6-204ENST00000504181 TNRC6AQ8NDV7 1962 aaKnown RBP13□□□□□ -0.33
LSM6-204ENST00000504181 PRAMEF33A0A0G2JMD5 474 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 EDDM13A0A1B0GTR0 161 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 TARSL2A2RTX5 802 aaKnown RBP12.99□□□□□ -0.33
LSM6-204ENST00000504181 NVLO15381 856 aaKnown RBP12.99□□□□□ -0.33
LSM6-204ENST00000504181 SLC31A1O15431 190 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 EPB41L2O43491 1005 aaKnown RBP12.99□□□□□ -0.33
LSM6-204ENST00000504181 PLRG1O43660 514 aaKnown RBP12.99□□□□□ -0.33
LSM6-204ENST00000504181 PRAMEF10O60809 474 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 JMJD7P0C870 316 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 MZF1P28698 734 aaPredicted RBP12.99□□□□□ -0.33
LSM6-204ENST00000504181 CSKP41240 450 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 MLLT10P55197 1068 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 HNRNPKP61978 463 aaKnown RBP eCLIP12.99□□□□□ -0.33
LSM6-204ENST00000504181 NR0B2Q15466 257 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 RSRC2Q7L4I2 434 aaKnown RBP12.99□□□□□ -0.33
LSM6-204ENST00000504181 CCDC186Q7Z3E2 898 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 SLC22A18ASQ8N1D0 253 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 TMEM145Q8NBT3 493 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 RASSF8Q8NHQ8 419 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 PLD4Q96BZ4 506 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 NOX5Q96PH1 765 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 CCDC3Q9BQI4 270 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 FGFBP2Q9BYJ0 223 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 FOXP3Q9BZS1 431 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 XYLT2Q9H1B5 865 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 NCKIPSDQ9NZQ3 722 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 PCDHB11Q9Y5F2 797 aa12.99□□□□□ -0.33
LSM6-204ENST00000504181 TBL1XO60907 577 aa12.98□□□□□ -0.33
LSM6-204ENST00000504181 KIF20AO95235 890 aa12.98□□□□□ -0.33
LSM6-204ENST00000504181 STAU1O95793 577 aaKnown RBP12.98□□□□□ -0.33
LSM6-204ENST00000504181 ITIH1P19827 911 aa12.98□□□□□ -0.33
LSM6-204ENST00000504181 UBA7P41226 1012 aa12.98□□□□□ -0.33
LSM6-204ENST00000504181 CTSOP43234 321 aaPredicted RBP12.98□□□□□ -0.33
LSM6-204ENST00000504181 KIF11P52732 1056 aa12.98□□□□□ -0.33
LSM6-204ENST00000504181 EIF3IQ13347 325 aaKnown RBP12.98□□□□□ -0.33
LSM6-204ENST00000504181 KMT5BQ4FZB7 885 aa12.98□□□□□ -0.33
LSM6-204ENST00000504181 WDR48Q8TAF3 677 aa12.98□□□□□ -0.33
LSM6-204ENST00000504181 JPH3Q8WXH2 748 aaPredicted RBP12.98□□□□□ -0.33
LSM6-204ENST00000504181 TTC17Q96AE7 1141 aa12.98□□□□□ -0.33
LSM6-204ENST00000504181 CGRRF1Q99675 332 aa12.98□□□□□ -0.33
LSM6-204ENST00000504181 FOXJ2Q9P0K8 574 aa12.98□□□□□ -0.33
LSM6-204ENST00000504181 INTS6Q9UL03 887 aaKnown RBP12.98□□□□□ -0.33
LSM6-204ENST00000504181 ERVW-1Q9UQF0 538 aa12.98□□□□□ -0.33
LSM6-204ENST00000504181 RNGTTO60942 597 aaKnown RBP12.97□□□□□ -0.33
LSM6-204ENST00000504181 SEMA7AO75326 666 aa12.97□□□□□ -0.33
LSM6-204ENST00000504181 ASLP04424 464 aa12.97□□□□□ -0.33
LSM6-204ENST00000504181 GNLYP22749 145 aa12.97□□□□□ -0.33
LSM6-204ENST00000504181 GRNP28799 593 aaKnown RBP12.97□□□□□ -0.33
LSM6-204ENST00000504181 VASPP50552 380 aaPredicted RBP12.97□□□□□ -0.33
LSM6-204ENST00000504181 CLDN2P57739 230 aa12.97□□□□□ -0.33
LSM6-204ENST00000504181 ARID5BQ14865 1188 aa12.97□□□□□ -0.33
LSM6-204ENST00000504181 TRIP4Q15650 581 aaPredicted RBP12.97□□□□□ -0.33
LSM6-204ENST00000504181 OR6B2Q6IFH4 312 aa12.97□□□□□ -0.33
LSM6-204ENST00000504181 CAPRIN2Q6IMN6 1127 aaKnown RBP12.97□□□□□ -0.33
LSM6-204ENST00000504181 PTPRN2Q92932 1015 aa12.97□□□□□ -0.33
LSM6-204ENST00000504181 SYAP1Q96A49 352 aaPredicted RBP12.97□□□□□ -0.33
LSM6-204ENST00000504181 IFT43Q96FT9 208 aa12.97□□□□□ -0.33
LSM6-204ENST00000504181 PPP1R13BQ96KQ4 1090 aa12.97□□□□□ -0.33
LSM6-204ENST00000504181 STRADBQ9C0K7 418 aa12.97□□□□□ -0.33
LSM6-204ENST00000504181 PREBQ9HCU5 417 aa12.97□□□□□ -0.33
LSM6-204ENST00000504181 STIM2Q9P246 746 aa12.97□□□□□ -0.33
LSM6-204ENST00000504181 PCDHB13Q9Y5F0 798 aa12.97□□□□□ -0.33
LSM6-204ENST00000504181 CHD5Q8TDI0 1954 aa12.96□□□□□ -0.33
LSM6-204ENST00000504181 LRP4O75096 1905 aa12.96□□□□□ -0.33
LSM6-204ENST00000504181 ITIH6Q6UXX5 1313 aa12.96□□□□□ -0.33
LSM6-204ENST00000504181 HIVEP1P15822 2718 aa12.96□□□□□ -0.33
LSM6-204ENST00000504181 NTN3O00634 580 aaPredicted RBP12.96□□□□□ -0.33
LSM6-204ENST00000504181 KIAA0391O15091 583 aaKnown RBP12.96□□□□□ -0.33
LSM6-204ENST00000504181 SLC26A4O43511 780 aa12.96□□□□□ -0.33
LSM6-204ENST00000504181 VAV1P15498 845 aa12.96□□□□□ -0.33
LSM6-204ENST00000504181 ATICP31939 592 aa12.96□□□□□ -0.33
LSM6-204ENST00000504181 ETV5P41161 510 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms