RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ERMARDQ5T6L9 678 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 TTC39BQ5VTQ0 682 aaPredicted RBP10.34□□□□□ -0.75
NUP54-203ENST00000504173 ZNF662Q6ZS27 426 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 C14orf80Q86SX3 495 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 PSTKQ8IV42 348 aaKnown RBP10.34□□□□□ -0.75
NUP54-203ENST00000504173 CFAP52Q8N1V2 620 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 RNF10Q8N5U6 811 aaKnown RBP10.34□□□□□ -0.75
NUP54-203ENST00000504173 HSPH1Q92598 858 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 MYEOVQ96EZ4 313 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 XPO6Q96QU8 1125 aaKnown RBP10.34□□□□□ -0.75
NUP54-203ENST00000504173 EPAS1Q99814 870 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 OSBPL2Q9H1P3 480 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 GOLPH3Q9H4A6 298 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 LTB4R2Q9NPC1 389 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 LZTFL1Q9NQ48 299 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 PLK2Q9NYY3 685 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 STIM2Q9P246 746 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 OR12D3Q9UGF7 316 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 GPSM3Q9Y4H4 160 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 ALG6Q9Y672 507 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.34□□□□□ -0.759e-6■□□□□ 11.3
NUP54-203ENST00000504173 COL4A2P08572 1712 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 ADAMTS20P59510 1910 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 GRID2IPA4D2P6 1211 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 E9PAM4 449 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 SPECC1L-ADORA2AF8WAN1 911 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 GFRA2O00451 464 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 CREB3O43889 395 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 PENKP01210 267 aaPredicted RBP10.33□□□□□ -0.76
NUP54-203ENST00000504173 KRT7P08729 469 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 RARAP10276 462 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 HOXD9P28356 352 aaPredicted RBP10.33□□□□□ -0.76
NUP54-203ENST00000504173 L1CAMP32004 1257 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 CTHP32929 405 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 TPI1P60174 286 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 NRG1Q02297 640 aaPredicted RBP10.33□□□□□ -0.76
NUP54-203ENST00000504173 KRT81Q14533 505 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 UBXN2BQ14CS0 331 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 CA9Q16790 459 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 STPG1Q5TH74 334 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 FYB2Q5VWT5 728 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 TXNRD3NBQ6F5E7 133 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 PSAPL1Q6NUJ1 521 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 RWDD4Q6NW29 188 aaKnown RBP10.33□□□□□ -0.76
NUP54-203ENST00000504173 TPRG1Q6ZUI0 275 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 CYP4V2Q6ZWL3 525 aaPredicted RBP10.33□□□□□ -0.76
NUP54-203ENST00000504173 RALGPS2Q86X27 583 aaPredicted RBP10.33□□□□□ -0.76
NUP54-203ENST00000504173 CCDC117Q8IWD4 279 aaPredicted RBP10.33□□□□□ -0.76
NUP54-203ENST00000504173 SYCE1Q8N0S2 351 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 PYROXD2Q8N2H3 581 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 NAT16Q8N8M0 369 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 KIAA1524Q8TCG1 905 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 TEKT4Q8WW24 435 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 IGSF8Q969P0 613 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 EXOC4Q96A65 974 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 TBC1D31Q96DN5 1066 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 MSANTD3Q96H12 275 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 BBC3Q96PG8 261 aaPredicted RBP10.33□□□□□ -0.76
NUP54-203ENST00000504173 KCTD15Q96SI1 283 aaPredicted RBP10.33□□□□□ -0.76
NUP54-203ENST00000504173 NELL2Q99435 816 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 MAGEB5Q9BZ81 275 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.33□□□□□ -0.76
NUP54-203ENST00000504173 DNAJC17Q9NVM6 304 aaKnown RBP10.33□□□□□ -0.76
NUP54-203ENST00000504173 TRMT1Q9NXH9 659 aaKnown RBP10.33□□□□□ -0.76
NUP54-203ENST00000504173 PYCARDQ9ULZ3 195 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 CAPN6Q9Y6Q1 641 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 MYOFQ9NZM1 2061 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 CFAP46Q8IYW2 2715 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 SPTA1P02549 2419 aa10.33□□□□□ -0.76
NUP54-203ENST00000504173 IGLV3-10A0A075B6K4 115 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 A0A1B0GVM2 712 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 TCAF2A6NFQ2 919 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.32□□□□□ -0.76
NUP54-203ENST00000504173 FAM72CH0Y354 149 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 H3BRJ5 948 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 EEF2KO00418 725 aaKnown RBP10.32□□□□□ -0.76
NUP54-203ENST00000504173 NCAM2O15394 837 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 PSTPIP1O43586 416 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 CACNG3O60359 315 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 TULP3O75386 442 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 PALMO75781 387 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 LRIG2O94898 1065 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 LUC7L3O95232 432 aaKnown RBP10.32□□□□□ -0.76
NUP54-203ENST00000504173 IRAK1P51617 712 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 FOXC1Q12948 553 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 CDH18Q13634 790 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 GAB4Q2WGN9 574 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 C5orf22Q49AR2 442 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 ODF2Q5BJF6 829 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 PPP6R3Q5H9R7 873 aaPredicted RBP10.32□□□□□ -0.76
NUP54-203ENST00000504173 MPP7Q5T2T1 576 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 FAM72AQ5TYM5 149 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 MANEALQ5VSG8 457 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 LRRC38Q5VT99 294 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 GRAMD4Q6IC98 578 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 FAM72DQ6L9T8 149 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 C1orf228Q6PIY5 440 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 CHST9Q7L1S5 443 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 PEX26Q7Z412 305 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 POLNQ7Z5Q5 900 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms