RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 SCAPQ12770 1279 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 NAB1Q13506 487 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 PPP2R5DQ14738 602 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 PCLAFQ15004 111 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 ACSBG2Q5FVE4 666 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 RWDD4Q6NW29 188 aaKnown RBP11.46□□□□□ -0.57
CHMP3-209ENST00000494623 AGMOQ6ZNB7 445 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 ENDOVQ8N8Q3 282 aaKnown RBP11.46□□□□□ -0.57
CHMP3-209ENST00000494623 PIWIL2Q8TC59 973 aaKnown RBP11.46□□□□□ -0.57
CHMP3-209ENST00000494623 HASPINQ8TF76 798 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 WDR60Q8WVS4 1066 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 MYLPFQ96A32 169 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 ZNF778Q96MU6 729 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 CPNE1Q99829 537 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 SIK2Q9H0K1 926 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 CHRAC1Q9NRG0 131 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 SNX15Q9NRS6 342 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 PNPOQ9NVS9 261 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 RPL26L1Q9UNX3 145 aaKnown RBP11.46□□□□□ -0.57
CHMP3-209ENST00000494623 Q9Y3F1 56 aa11.46□□□□□ -0.57
CHMP3-209ENST00000494623 MRPL42Q9Y6G3 142 aaKnown RBP11.46□□□□□ -0.57
CHMP3-209ENST00000494623 C9IYK1 514 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 GOLGA8TH3BQL2 631 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 NCAM2O15394 837 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 CAPN15O75808 1086 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 B3GAT3O94766 335 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 LRIG2O94898 1065 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 F9P00740 461 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 PRKCGP05129 697 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 BRCC3P46736 316 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 PTDSS1P48651 473 aaKnown RBP11.46□□□□□ -0.58
CHMP3-209ENST00000494623 HCAR3P49019 387 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 GJA9P57773 515 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 MXRA7P84157 204 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 CCDC6Q16204 474 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 ANKRD20A4Q4UJ75 823 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 GDF6Q6KF10 455 aaPredicted RBP11.46□□□□□ -0.58
CHMP3-209ENST00000494623 ATG14Q6ZNE5 492 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 TNS4Q8IZW8 715 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 RBM15BQ8NDT2 890 aaKnown RBP11.46□□□□□ -0.58
CHMP3-209ENST00000494623 SMARCD1Q96GM5 515 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 EPAS1Q99814 870 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 MLPHQ9BV36 600 aaPredicted RBP11.46□□□□□ -0.58
CHMP3-209ENST00000494623 CAB39LQ9H9S4 337 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 PTCH2Q9Y6C5 1203 aa11.46□□□□□ -0.58
CHMP3-209ENST00000494623 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.45□□□□□ -0.58
CHMP3-209ENST00000494623 ARHGAP42A6NI28 874 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 SPECC1L-ADORA2AF8WAN1 911 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 KRT36O76013 467 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 PGK1P00558 417 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 LMNAP02545 664 aaKnown RBP11.45□□□□□ -0.58
CHMP3-209ENST00000494623 PROCP04070 461 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 MX2P20592 715 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 HOXC8P31273 242 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 SPRP35270 261 aaPredicted RBP11.45□□□□□ -0.58
CHMP3-209ENST00000494623 HUNKP57058 714 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 IRF5Q13568 498 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 FAM91A1Q658Y4 838 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 TRIM68Q6AZZ1 485 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 FSTL4Q6MZW2 842 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 BHLHA9Q7RTU4 235 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 TMEM135Q86UB9 458 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 RSPH3Q86UC2 560 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 TMPRSS6Q8IU80 811 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 PLD6Q8N2A8 252 aaKnown RBP11.45□□□□□ -0.58
CHMP3-209ENST00000494623 CCDC106Q9BWC9 280 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 AGO3Q9H9G7 860 aaKnown RBP11.45□□□□□ -0.58
CHMP3-209ENST00000494623 CASS4Q9NQ75 786 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 C20orf96Q9NUD7 363 aaPredicted RBP11.45□□□□□ -0.58
CHMP3-209ENST00000494623 TAGLN3Q9UI15 199 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 ZCWPW2A0A1B0GU75 182 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 SERPINE1P05121 402 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 SERPINA6P08185 405 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 RALBP11234 206 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 CPA3P15088 417 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 PCSK1P29120 753 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 CXCR3P49682 368 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 ERFP50548 548 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 ITGA9Q13797 1035 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 RCN1Q15293 331 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 DLG2Q15700 870 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 UPP1Q16831 310 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 OTOP3Q7RTS5 596 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 TAC4Q86UU9 113 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 DTX3LQ8TDB6 740 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 PPP4R1Q8TF05 950 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 SH3TC2Q8TF17 1288 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 PGAP3Q96FM1 320 aaPredicted RBP11.45□□□□□ -0.58
CHMP3-209ENST00000494623 FAM161BQ96MY7 647 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 RBBP8Q99708 897 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 RTP3Q9BQQ7 232 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 GBA3Q9H227 469 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 RRAGCQ9HB90 399 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 IARS2Q9NSE4 1012 aaKnown RBP11.45□□□□□ -0.58
CHMP3-209ENST00000494623 COPG2Q9UBF2 871 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 RAD54BQ9Y620 910 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 NUP205Q92621 2012 aa11.45□□□□□ -0.58
CHMP3-209ENST00000494623 EIF4E1BA6NMX2 242 aaKnown RBP11.44□□□□□ -0.58
CHMP3-209ENST00000494623 DFFAO00273 331 aa11.44□□□□□ -0.58
CHMP3-209ENST00000494623 TNPO2O14787 897 aaKnown RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms