RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 C17orf102A2RUQ5 167 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 TPP1O14773 563 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 IL31Q6EBC2 164 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 IRGCQ6NXR0 463 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 OR52K1Q8NGK4 314 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 SENP8Q96LD8 212 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 HNRNPABQ99729 332 aaKnown RBP16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 ZNF180Q9UJW8 692 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 PGM3O95394 542 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 NCAM1P13591 858 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 PEX2P28328 305 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 ARRB2P32121 409 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 RPL34P49207 117 aaKnown RBP16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 ASPHQ12797 758 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 IFRD2Q12894 506 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 RASSF3Q86WH2 238 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 TMPRSS6Q8IU80 811 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 C10orf107Q8IVU9 208 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 PHTF2Q8N3S3 785 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 NPY6RQ99463 290 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 CAB39LQ9H9S4 337 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 TAGLN3Q9UI15 199 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 DAB1O75553 588 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 OR6B1O95007 311 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 ALDOAP04075 364 aaKnown RBP16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 LYNP07948 512 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 NOS2P35228 1153 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 PNPLA4P41247 253 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 NUMBP49757 651 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 CDC16Q13042 620 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 MAP2K5Q13163 448 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 CUL3Q13618 768 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 DLG2Q15700 870 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 SFT2D3Q587I9 215 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 LGSNQ5TDP6 509 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 RNF111Q6ZNA4 994 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 NPWQ8N729 165 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 PCED1BQ96HM7 432 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 SMOQ99835 787 aa16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 FRMD8Q9BZ67 464 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-210ENST00000494566 CAPN14A8MX76 684 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 DCXO43602 365 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 ERCC2P18074 760 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 OCRLQ01968 901 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 ITGA9Q13797 1035 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 GRAMD1BQ3KR37 738 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 C6orf163Q5TEZ5 329 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 LRRC39Q96DD0 335 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 WWP1Q9H0M0 922 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 TSPYL2Q9H2G4 693 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 MOCS1Q9NZB8 636 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 KLHL8Q9P2G9 620 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 SLC45A1Q9Y2W3 748 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 TTC3P53804 2025 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 hCG_2014768A0A024R1R8 64 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 XPOTO43592 962 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 FAM200BP0CF97 657 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 WARSP23381 471 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 CRYBB1P53674 252 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 AQP4P55087 323 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 GPR162Q16538 588 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 ATG16L1Q676U5 607 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 ZMIZ2Q8NF64 920 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 XPNPEP3Q9NQH7 507 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 DDIT4Q9NX09 232 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 PCDHGB4Q9UN71 923 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 PLA2G4CQ9UP65 541 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 PCDHGB5Q9Y5G0 923 aa16.91■□□□□ 0.3
CCDC88B-210ENST00000494566 IQCA1LA6NCM1 817 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 SDR42E2A6NKP2 422 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 LIN7AO14910 233 aaPredicted RBP16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 CFLARO15519 480 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 BPGMP07738 259 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 DSG1Q02413 1049 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 XKR4Q5GH76 650 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 DEFB107AQ8IZN7 70 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 ZNF398Q8TD17 642 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 CELF6Q96J87 481 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 FCRL3Q96P31 734 aaPredicted RBP16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 PPP1R10Q96QC0 940 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 SH3GL3Q99963 347 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 ECSITQ9BQ95 431 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 SPATA31D3P0C874 917 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 TCN1P20061 433 aaPredicted RBP16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 AXLP30530 894 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 CCNFP41002 786 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 SCNN1GP51170 649 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 TRIP10Q15642 601 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 TEX44Q53QW1 395 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 SMYD5Q6GMV2 418 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 PACS1Q6VY07 963 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 SPATA31D4Q6ZUB0 917 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 AP5M1Q9H0R1 490 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 ADAMTS6Q9UKP5 1117 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 CDY2AQ9Y6F7 541 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 RPS6KL1Q9Y6S9 549 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 CCDC160A6NGH7 325 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 HAS3O00219 553 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 TPH1P17752 444 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 SERPINB5P36952 375 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms