RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 NOCTQ9UK39 431 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 CHRNB2P17787 502 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 SP2Q02086 613 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 C1orf127Q8N9H9 656 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 CALML6Q8TD86 181 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 VANGL2Q9ULK5 521 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 NUP98P52948 1817 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 CLDN5O00501 218 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 ADCY6O43306 1168 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 LTFP02788 710 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 YBX3P16989 372 aaKnown RBP eCLIP16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 HADHAP40939 763 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 SFSWAPQ12872 951 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 MAP2K5Q13163 448 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 SNX17Q15036 470 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 NFE2Q16621 373 aaPredicted RBP16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 TTC7BQ86TV6 843 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 DNAJC1Q96KC8 554 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 SYT17Q9BSW7 474 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 FICDQ9BVA6 458 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 NT5MQ9NPB1 228 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 TRPV2Q9Y5S1 764 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 AP4B1Q9Y6B7 739 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 B4GALT4O60513 344 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 KPNA6O60684 536 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 TM7SF2O76062 418 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 TRUB2O95900 331 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 ICAM3P32942 547 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 MPP3Q13368 585 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 DUSP28Q4G0W2 176 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 ZFP1Q6P2D0 407 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 UNC93AQ86WB7 457 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 TDRD5Q8NAT2 981 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 SOCS4Q8WXH5 440 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 TSPAN17Q96FV3 270 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 SMARCD1Q96GM5 515 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 ZBTB18Q99592 522 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 SPATA16Q9BXB7 569 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 LATS2Q9NRM7 1088 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 LGALS13Q9UHV8 139 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 BLOC1S6Q9UL45 172 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 AAR2Q9Y312 384 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 CCNB1P14635 433 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 FGFR3P22607 806 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 GEMP55040 296 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 NEDD8Q15843 81 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 AAGABQ6PD74 315 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 CYP2R1Q6VVX0 501 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 BBS12Q6ZW61 710 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 CROCCP3Q8IVE0 287 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 RNF157Q96PX1 679 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 MRPL45Q9BRJ2 306 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 CCDC28BQ9BUN5 200 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 POPDC2Q9HBU9 364 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 CNTNAP1P78357 1384 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 SLC15A5A6NIM6 579 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 DPYSL4O14531 572 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 CCR1P32246 355 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 DCAF12L1Q5VU92 463 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 ANGPTL8Q6UXH0 198 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 DEFB128Q7Z7B8 93 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 ALLCQ8N6M5 410 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 TKTL2Q9H0I9 626 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 EML4Q9HC35 981 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 LMCD1Q9NZU5 365 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 LSM7Q9UK45 103 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 DSEQ9UL01 958 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 TRPM3Q9HCF6 1732 aaPredicted RBP16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 NELFEP18615 380 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 ABCG1P45844 678 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 B3GALNT2Q8NCR0 500 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 PPTC7Q8NI37 304 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 GIPC3Q8TF64 312 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 C12orf42Q96LP6 360 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 TUBGCP5Q96RT8 1024 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 TUBGCP4Q9UGJ1 667 aa16.62■□□□□ 0.25
CCDC88B-209ENST00000494080 MYH13Q9UKX3 1938 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 MGAT5Q09328 741 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 SATL1Q86VE3 508 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 VPS50Q96JG6 964 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 CYP4F12Q9HCS2 524 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 F8W8V4 182 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 ERBB2P04626 1255 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 RBBP7Q16576 425 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 FAM171A1Q5VUB5 890 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 TLDC1Q6P9B6 456 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 ZNF554Q86TJ5 538 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 SHCBP1Q8NEM2 672 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 BHLHE22Q8NFJ8 381 aaPredicted RBP16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 S100A14Q9HCY8 104 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 NSMCE4AQ9NXX6 385 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 DAPK2Q9UIK4 370 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 NPR3P17342 541 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 ARHGDIAP52565 204 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 PLD3Q8IV08 490 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 UNC45BQ8IWX7 931 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 TFAP2BQ92481 460 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 WNT8BQ93098 351 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 EBF3Q9H4W6 596 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms