RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 PCSK1NQ9UHG2 260 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 IP6K2Q9UHH9 426 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 AP4E1Q9UPM8 1137 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 NEU3Q9UQ49 428 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ZBTB24O43167 697 aaPredicted RBP16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PRPSAP2O60256 369 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 SYNCRIPO60506 623 aaKnown RBP16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 LRCH4O75427 683 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 EPHX1P07099 455 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 SRPRAP08240 638 aaKnown RBP16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 MIPP30301 263 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 OR1E1P30953 314 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PCK1P35558 622 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ST8SIA6P61647 398 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ECT2LQ008S8 904 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 SULT2A1Q06520 285 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 C6orf118Q5T5N4 469 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 NIPA2Q8N8Q9 360 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ERLEC1Q96DZ1 483 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ALG14Q96F25 216 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 BTBD6Q96KE9 485 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PEBP4Q96S96 227 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 EPAS1Q99814 870 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 FEM1AQ9BSK4 669 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 SNRNP25Q9BV90 132 aaKnown RBP16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 TPSD1Q9BZJ3 242 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 TMEM245Q9H330 911 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 RETREG1Q9H6L5 497 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 GPATCH2LQ9NWQ4 482 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 CTTNBP2NLQ9P2B4 639 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ZNF212Q9UDV6 495 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 VPS28Q9UK41 221 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 USP18Q9UMW8 372 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ERVW-1Q9UQF0 538 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 OR51B4Q9Y5P0 310 aa16.73■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 MYO1FO00160 1098 aa16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 HRO43593 1189 aa16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 HLA-EP13747 358 aa16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 RHOQP17081 205 aa16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 GABRG2P18507 467 aa16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 CTSOP43234 321 aaPredicted RBP16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 NUMBP49757 651 aa16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 SRSF5Q13243 272 aaKnown RBP16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ERMARDQ5T6L9 678 aa16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 NLRP14Q86W24 1093 aa16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PGBD3Q8N328 593 aa16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 KDM1BQ8NB78 822 aa16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 GAB3Q8WWW8 586 aa16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 NKD2Q969F2 451 aaPredicted RBP16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 MYO19Q96H55 970 aa16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 MRGPRX3Q96LB0 322 aa16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 EPC1Q9H2F5 836 aa16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 IMPACTQ9P2X3 320 aa16.72■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ILVBLA1L0T0 632 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 EIF3CLB5ME19 914 aaKnown RBP16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 CREB3O43889 395 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 RPP40O75818 363 aaKnown RBP16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 NDUFV2P19404 249 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 FECHP22830 423 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 HTR7P34969 479 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 MAPKAPK2P49137 400 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 SEMA3BQ13214 749 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 DAB2IPQ5VWQ8 1189 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ZNF783Q6ZMS7 281 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 CYP4V2Q6ZWL3 525 aaPredicted RBP16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PSTKQ8IV42 348 aaKnown RBP16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 CCDC170Q8IYT3 715 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ZNF366Q8N895 744 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 EIF3CQ99613 913 aaKnown RBP16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 DHX35Q9H5Z1 703 aaKnown RBP16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 TMEM248Q9NWD8 314 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 LCMT1Q9UIC8 334 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 SLC25A13Q9UJS0 675 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 INTUQ9ULD6 942 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 DOCK4Q8N1I0 1966 aa16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 MYO18AQ92614 2054 aaKnown RBP16.71■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 LMNAP02545 664 aaKnown RBP16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 EPHB2P29323 1055 aa16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 CYLC1P35663 651 aaPredicted RBP16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 STK19P49842 368 aaPredicted RBP16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 TPI1P60174 286 aa16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 KRT83P78385 493 aa16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 CAMK2GQ13555 558 aaPredicted RBP16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 SIM2Q14190 667 aaPredicted RBP16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 CA9Q16790 459 aa16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 USP39Q53GS9 565 aaKnown RBP16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 CEP68Q76N32 757 aa16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 RHOT2Q8IXI1 618 aa16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 DCAF4L2Q8NA75 395 aa16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 SPC24Q8NBT2 197 aa16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 RPL10LQ96L21 214 aaKnown RBP16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 MRGPRX1Q96LB2 322 aa16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 KCTD15Q96SI1 283 aaPredicted RBP16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 PSMB7Q99436 277 aa16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 C2orf49Q9BVC5 232 aaPredicted RBP16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 CATSPERBQ9H7T0 1116 aa16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 SUN2Q9UH99 717 aa16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 SMG5Q9UPR3 1016 aaKnown RBP16.7■□□□□ 0.26
MSH5-SAPCD1-206ENST00000491552 CKAP5Q14008 2032 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms