RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 CYP19A1P11511 503 aaPredicted RBP2.45□□□□□ -2.02
HMGB1-208ENST00000490788 VEGFAP15692 232 aaPredicted RBP2.45□□□□□ -2.02
HMGB1-208ENST00000490788 NPPBP16860 134 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 RPS6KB1P23443 525 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 THBS4P35443 961 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 PPM1AP35813 382 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 ME1P48163 572 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 FHL3Q13643 280 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 LAMB3Q13751 1172 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 DEFB115Q30KQ5 88 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 SYCP2LQ5T4T6 812 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 C10orf25Q5T742 122 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 LIPMQ5VYY2 423 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 TBC1D3GQ6DHY5 549 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 TBC1D3CQ6IPX1 549 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 C11orf87Q6NUJ2 197 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 C1orf228Q6PIY5 440 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 KYAT3Q6YP21 454 aaKnown RBP2.45□□□□□ -2.02
HMGB1-208ENST00000490788 RBM44Q6ZP01 1051 aaKnown RBP2.45□□□□□ -2.02
HMGB1-208ENST00000490788 RINLQ6ZS11 566 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 PIK3AP1Q6ZUJ8 805 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 TBC1D3Q8IZP1 549 aaPredicted RBP2.45□□□□□ -2.02
HMGB1-208ENST00000490788 SVIPQ8NHG7 77 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 BCAS4Q8TDM0 211 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 SLC22A17Q8WUG5 538 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 ASB12Q8WXK4 309 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 TMEM41AQ96HV5 264 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 KAZALD1Q96I82 304 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 ZNF845Q96IR2 970 aaPredicted RBP2.45□□□□□ -2.02
HMGB1-208ENST00000490788 TRMOQ9BU70 441 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 TM2D2Q9BX73 214 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 BRD8Q9H0E9 1235 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 FOXP1Q9H334 677 aaPredicted RBP2.45□□□□□ -2.02
HMGB1-208ENST00000490788 CCDC134Q9H6E4 229 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 ERVK-5Q9HDB9 667 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 CDC23Q9UJX2 597 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 HS3ST3B1Q9Y662 390 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 LRPPRCP42704 1394 aaKnown RBP2.45□□□□□ -2.02
HMGB1-208ENST00000490788 ZMYM2Q9UBW7 1377 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 NWD2Q9ULI1 1742 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 THSD7AQ9UPZ6 1657 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 PIK3C2BO00750 1634 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 PREX2Q70Z35 1606 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 SLC22A23A1A5C7 686 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 GOLGA6L3A6NEY3 463 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 C3orf70A6NLC5 250 aaPredicted RBP2.44□□□□□ -2.02
HMGB1-208ENST00000490788 C2CD4BA6NLJ0 364 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 EFCAB8A8MWE9 144 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 H3BNX3 289 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 PRYO14603 147 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 RRHO14718 337 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 TLR2O60603 784 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 TULP3O75386 442 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 TAF5LO75529 589 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 NFATC1O95644 943 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 CER1O95813 267 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 MBPP02686 304 aaPredicted RBP2.44□□□□□ -2.02
HMGB1-208ENST00000490788 ANXA6P08133 673 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 ITGA2BP08514 1039 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 SFPQP23246 707 aaKnown RBP eCLIP2.44□□□□□ -2.02
HMGB1-208ENST00000490788 HOXD9P28356 352 aaPredicted RBP2.44□□□□□ -2.02
HMGB1-208ENST00000490788 CDC25AP30304 524 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 CIITAP33076 1130 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 GRK5P34947 590 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 IL6STP40189 918 aaPredicted RBP2.44□□□□□ -2.02
HMGB1-208ENST00000490788 STAT6P42226 847 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 POLE2P56282 527 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 TNFAIP2Q03169 654 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 CFHR1Q03591 330 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 ICA1Q05084 483 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 KCTD2Q14681 263 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 RPS6KA2Q15349 733 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 TRIM71Q2Q1W2 868 aaKnown RBP2.44□□□□□ -2.02
HMGB1-208ENST00000490788 ZNF260Q3ZCT1 412 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 EARS2Q5JPH6 523 aaKnown RBP2.44□□□□□ -2.02
HMGB1-208ENST00000490788 MANEAQ5SRI9 462 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 MSANTD2Q6P1R3 559 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 XRRA1Q6P2D8 792 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 TMEM88Q6PEY1 159 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 LRIG3Q6UXM1 1119 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 DEF8Q6ZN54 512 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 C1QL2Q7Z5L3 287 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 UBE2Q1Q7Z7E8 422 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 TRABD2AQ86V40 505 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 MORC1Q86VD1 984 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 CCDC117Q8IWD4 279 aaPredicted RBP2.44□□□□□ -2.02
HMGB1-208ENST00000490788 SUGP2Q8IX01 1082 aaKnown RBP eCLIP2.44□□□□□ -2.02
HMGB1-208ENST00000490788 FTSJ3Q8IY81 847 aaKnown RBP2.44□□□□□ -2.02
HMGB1-208ENST00000490788 LAS2Q8IYD9 372 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 CNPY4Q8N129 248 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 ARFGAP1Q8N6T3 406 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 GADD45GIP1Q8TAE8 222 aaPredicted RBP2.44□□□□□ -2.02
HMGB1-208ENST00000490788 MPLKIPQ8TAP9 179 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 HMGB4Q8WW32 186 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 COQ8BQ96D53 544 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 GPR78Q96P69 363 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 GDF15Q99988 308 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 ELOVL1Q9BW60 279 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 TMEM120AQ9BXJ8 343 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 ZNF700Q9H0M5 742 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms