RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 VAV1P15498 845 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 C5AR1P21730 350 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 MZF1P28698 734 aaPredicted RBP12.8□□□□□ -0.36
CPSF3-204ENST00000489403 CD38P28907 300 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 DRD3P35462 400 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 CCR5P51681 352 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 STX17P56962 302 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 CYP4F3Q08477 520 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 MORC3Q14149 939 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 TAF5Q15542 800 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 RNF219Q5W0B1 726 aaPredicted RBP12.8□□□□□ -0.36
CPSF3-204ENST00000489403 SND1Q7KZF4 910 aaKnown RBP eCLIP12.8□□□□□ -0.36
CPSF3-204ENST00000489403 TMEM110Q86TL2 294 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 PDZD3Q86UT5 571 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 ATP6V0D2Q8N8Y2 350 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 OR14C36Q8NHC7 312 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 HNRNPLLQ8WVV9 542 aaKnown RBP12.8□□□□□ -0.36
CPSF3-204ENST00000489403 ZNF606Q8WXB4 792 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 PRMT1Q99873 361 aaKnown RBP12.8□□□□□ -0.36
CPSF3-204ENST00000489403 UBE2TQ9NPD8 197 aaPredicted RBP12.8□□□□□ -0.36
CPSF3-204ENST00000489403 AASDHPPTQ9NRN7 309 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.8□□□□□ -0.36
CPSF3-204ENST00000489403 KCNU1A8MYU2 1149 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 BIN1O00499 593 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 ENC1O14682 589 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 THAP12O43422 761 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 MED7O43513 233 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 GNA14O95837 355 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 IL1BP01584 269 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 PDGFRAP16234 1089 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 GOT1P17174 413 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 GNA15P30679 374 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 METAP1P53582 386 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 PPP2CBP62714 309 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 YWHAZP63104 245 aaKnown RBP12.79□□□□□ -0.36
CPSF3-204ENST00000489403 PPP2CAP67775 309 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 PAK1Q13153 545 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 PDCLQ13371 301 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 SLC12A1Q13621 1099 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 ELAVL3Q14576 367 aaKnown RBP12.79□□□□□ -0.36
CPSF3-204ENST00000489403 ACAP1Q15027 740 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 CXorf57Q6NSI4 855 aaKnown RBP12.79□□□□□ -0.36
CPSF3-204ENST00000489403 CCAR2Q8N163 923 aaKnown RBP12.79□□□□□ -0.36
CPSF3-204ENST00000489403 SAP25Q8TEE9 199 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 FRS2Q8WU20 508 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 FAM131CQ96AQ9 280 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 SKA1Q96BD8 255 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 SERAC1Q96JX3 654 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 MED15Q96RN5 788 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 SRRTQ9BXP5 876 aaKnown RBP12.79□□□□□ -0.36
CPSF3-204ENST00000489403 THAP9Q9H5L6 903 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 SCUBE2Q9NQ36 999 aa12.79□□□□□ -0.36
CPSF3-204ENST00000489403 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.79□□□□□ -0.36
CPSF3-204ENST00000489403 A0A1B0GVM2 712 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 TCAF2A6NFQ2 919 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 BECN2A8MW95 431 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 LATO43561 262 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 LDOC1O95751 146 aaPredicted RBP12.78□□□□□ -0.36
CPSF3-204ENST00000489403 ITGAVP06756 1048 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 ABCB4P21439 1286 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 EPHA8P29322 1005 aaPredicted RBP12.78□□□□□ -0.36
CPSF3-204ENST00000489403 NNMTP40261 264 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 PLK1P53350 603 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 CLDN6P56747 220 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 NXPH1P58417 271 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 NUCB2P80303 420 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 DNAJC3Q13217 504 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 SOWAHCQ53LP3 525 aaPredicted RBP12.78□□□□□ -0.36
CPSF3-204ENST00000489403 TTC39BQ5VTQ0 682 aaPredicted RBP12.78□□□□□ -0.36
CPSF3-204ENST00000489403 GJB7Q6PEY0 223 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 PDCD7Q8N8D1 485 aaKnown RBP12.78□□□□□ -0.36
CPSF3-204ENST00000489403 OR52K2Q8NGK3 314 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 CNDP2Q96KP4 475 aaKnown RBP12.78□□□□□ -0.36
CPSF3-204ENST00000489403 SLC2A13Q96QE2 648 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 SPAG5Q96R06 1193 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 GDF3Q9NR23 364 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 TPX2Q9ULW0 747 aaKnown RBP12.78□□□□□ -0.36
CPSF3-204ENST00000489403 PCDHGA1Q9Y5H4 931 aa12.78□□□□□ -0.36
CPSF3-204ENST00000489403 SMG1Q96Q15 3661 aaKnown RBP12.77□□□□□ -0.36
CPSF3-204ENST00000489403 SYNJ2BP-COX16A0A087WUM0 186 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 TBC1D3DA0A087WVF3 549 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 TBC1D3IA0A087WXS9 549 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 TBC1D3EA0A087X179 549 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 TBC1D3KA0A087X1G2 549 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 TBC1D3FA6NER0 549 aaPredicted RBP12.77□□□□□ -0.37
CPSF3-204ENST00000489403 TBC1D3LB9A6J9 549 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 PLK4O00444 970 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 YKT6O15498 198 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 RFPL3O75679 317 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 TBC1D3HP0C7X1 549 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 CENPCQ03188 943 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 SULT2A1Q06520 285 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 RABGAP1LQ5R372 815 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 TBC1D3GQ6DHY5 549 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 TBC1D3CQ6IPX1 549 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 FBXL22Q6P050 247 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 TRIM65Q6PJ69 517 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.77□□□□□ -0.37
CPSF3-204ENST00000489403 ENOSF1Q7L5Y1 443 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 TMPRSS12Q86WS5 348 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms