RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 AASDHPPTQ9NRN7 309 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 CNTN6Q9UQ52 1028 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 PCDHB4Q9Y5E5 795 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 DOCK9Q9BZ29 2069 aa13.46□□□□□ -0.26
HDAC6-227ENST00000485102 EIF4E1BA6NMX2 242 aaKnown RBP13.45□□□□□ -0.26
HDAC6-227ENST00000485102 M0QYV0 167 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 WNT9AO14904 365 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 SLC7A4O43246 635 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 MAGEC1O60732 1142 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 IGLV3-25P01717 112 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 PTMSP20962 102 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 DRD3P35462 400 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 NNMTP40261 264 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 CTSOP43234 321 aaPredicted RBP13.45□□□□□ -0.26
HDAC6-227ENST00000485102 ACADSBP45954 432 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 GCNT1Q02742 428 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 LRMPQ12912 555 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 NAPEPLDQ6IQ20 393 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 FOXR2Q6PJQ5 311 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 MMS22LQ6ZRQ5 1243 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 CARNMT1Q8N4J0 409 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 SNIP1Q8TAD8 396 aaKnown RBP13.45□□□□□ -0.26
HDAC6-227ENST00000485102 SERAC1Q96JX3 654 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 BTN2A3PQ96KV6 586 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 CEP63Q96MT8 703 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 PRORYQ9H606 182 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 ARHGAP20Q9P2F6 1191 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 NAALADL1Q9UQQ1 740 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 DMTF1Q9Y222 760 aa13.45□□□□□ -0.26
HDAC6-227ENST00000485102 PIK3R2O00459 728 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 CKMT2P17540 419 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 BRD2P25440 801 aaKnown RBP13.44□□□□□ -0.26
HDAC6-227ENST00000485102 MZF1P28698 734 aaPredicted RBP13.44□□□□□ -0.26
HDAC6-227ENST00000485102 OXCT1P55809 520 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 CETN1Q12798 172 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 TARDBPQ13148 414 aaKnown RBP eCLIP13.44□□□□□ -0.26
HDAC6-227ENST00000485102 DNAJC3Q13217 504 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 PNOCQ13519 176 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 CCDC157Q569K6 752 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 RNF219Q5W0B1 726 aaPredicted RBP13.44□□□□□ -0.26
HDAC6-227ENST00000485102 CLEC17AQ6ZS10 378 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 TMEM110Q86TL2 294 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 PRPF39Q86UA1 669 aaKnown RBP13.44□□□□□ -0.26
HDAC6-227ENST00000485102 APCDD1Q8J025 514 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 FMR1NBQ8N0W7 255 aaPredicted RBP13.44□□□□□ -0.26
HDAC6-227ENST00000485102 CFAP52Q8N1V2 620 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 STK40Q8N2I9 435 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 PPM1KQ8N3J5 372 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 EID2Q8N6I1 236 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 OR14C36Q8NHC7 312 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 FRS2Q8WU20 508 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 CRELD1Q96HD1 420 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 SPAG5Q96R06 1193 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 PPP1R9BQ96SB3 815 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 SLC4A5Q9BY07 1137 aa13.44□□□□□ -0.26
HDAC6-227ENST00000485102 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.44□□□□□ -0.26
HDAC6-227ENST00000485102 KALRNO60229 2985 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 CBX4O00257 560 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 ATXN7O15265 892 aaPredicted RBP13.43□□□□□ -0.26
HDAC6-227ENST00000485102 PLRG1O43660 514 aaKnown RBP13.43□□□□□ -0.26
HDAC6-227ENST00000485102 TLX3O43711 291 aaPredicted RBP13.43□□□□□ -0.26
HDAC6-227ENST00000485102 APOEP02649 317 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 TACR2P21452 398 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 ACP1P24666 158 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 PSMD8P48556 350 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 BNIP3Q12983 259 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 HES3Q5TGS1 186 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 TTC39BQ5VTQ0 682 aaPredicted RBP13.43□□□□□ -0.26
HDAC6-227ENST00000485102 SYPL2Q5VXT5 272 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 LRRC69Q6ZNQ3 347 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 TAC4Q86UU9 113 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 TRIM69Q86WT6 500 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 SPATS2Q86XZ4 545 aaKnown RBP13.43□□□□□ -0.26
HDAC6-227ENST00000485102 LGI2Q8N0V4 545 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 KAT5Q92993 513 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 DHTKD1Q96HY7 919 aaPredicted RBP13.43□□□□□ -0.26
HDAC6-227ENST00000485102 RPL10LQ96L21 214 aaKnown RBP13.43□□□□□ -0.26
HDAC6-227ENST00000485102 PRMT1Q99873 361 aaKnown RBP13.43□□□□□ -0.26
HDAC6-227ENST00000485102 MIS12Q9H081 205 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 THAP9Q9H5L6 903 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 POPDC2Q9HBU9 364 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 TJP2Q9UDY2 1190 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 CYTH4Q9UIA0 394 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 XPO7Q9UIA9 1087 aaKnown RBP13.43□□□□□ -0.26
HDAC6-227ENST00000485102 HOOK1Q9UJC3 728 aaKnown RBP13.43□□□□□ -0.26
HDAC6-227ENST00000485102 COL6A6A6NMZ7 2263 aa13.43□□□□□ -0.26
HDAC6-227ENST00000485102 NYNRINQ9P2P1 1898 aaKnown RBP13.42□□□□□ -0.26
HDAC6-227ENST00000485102 TBC1D3DA0A087WVF3 549 aa13.42□□□□□ -0.26
HDAC6-227ENST00000485102 TBC1D3IA0A087WXS9 549 aa13.42□□□□□ -0.26
HDAC6-227ENST00000485102 TBC1D3EA0A087X179 549 aa13.42□□□□□ -0.26
HDAC6-227ENST00000485102 TBC1D3KA0A087X1G2 549 aa13.42□□□□□ -0.26
HDAC6-227ENST00000485102 A0A1B0GVM2 712 aa13.42□□□□□ -0.26
HDAC6-227ENST00000485102 TRIM49BA6NDI0 452 aa13.42□□□□□ -0.26
HDAC6-227ENST00000485102 TBC1D3FA6NER0 549 aaPredicted RBP13.42□□□□□ -0.26
HDAC6-227ENST00000485102 TCAF2A6NFQ2 919 aa13.42□□□□□ -0.26
HDAC6-227ENST00000485102 KCNU1A8MYU2 1149 aa13.42□□□□□ -0.26
HDAC6-227ENST00000485102 TBC1D3LB9A6J9 549 aa13.42□□□□□ -0.26
HDAC6-227ENST00000485102 ALOX15BO15296 676 aa13.42□□□□□ -0.26
HDAC6-227ENST00000485102 RRP8O43159 456 aaKnown RBP13.42□□□□□ -0.26
HDAC6-227ENST00000485102 ATP9BO43861 1147 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms