RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 NAGLUP54802 743 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 GEMP55040 296 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 GHRHRQ02643 423 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 MED21Q13503 144 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 PPM1JQ5JR12 505 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 SWT1Q5T5J6 900 aaKnown RBP11.88□□□□□ -0.51
NPHP4-204ENST00000460696 GALNT4Q8N4A0 578 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 EFCAB3Q8N7B9 438 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 MAML3Q96JK9 1138 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 BCO2Q9BYV7 579 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 CAB39LQ9H9S4 337 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 IL1RL2Q9HB29 575 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 SLC17A6Q9P2U8 582 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 SUFUQ9UMX1 484 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 SOX13Q9UN79 622 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 ADAMTS5Q9UNA0 930 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 MYH9P35579 1960 aaKnown RBP11.88□□□□□ -0.51
NPHP4-204ENST00000460696 ADGRA2Q96PE1 1338 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 BCLAF3A2AJT9 711 aaKnown RBP11.88□□□□□ -0.51
NPHP4-204ENST00000460696 CXorf49A8MYA2 514 aaPredicted RBP11.88□□□□□ -0.51
NPHP4-204ENST00000460696 CCND3P30281 292 aaPredicted RBP11.88□□□□□ -0.51
NPHP4-204ENST00000460696 ADRA1BP35368 520 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 BRCC3P46736 316 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 HDAC4P56524 1084 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 LILRA4P59901 499 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 CLDN10P78369 228 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 ZNF470Q6ECI4 717 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 LRRC8EQ6NSJ5 796 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 PACS1Q6VY07 963 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 DCP1BQ8IZD4 617 aaKnown RBP11.88□□□□□ -0.51
NPHP4-204ENST00000460696 BANPQ8N9N5 519 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 PHF21BQ96EK2 531 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 NMRAL1Q9HBL8 299 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 DMAP1Q9NPF5 467 aaPredicted RBP11.88□□□□□ -0.51
NPHP4-204ENST00000460696 ARHGEF4Q9NR80 690 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 NSMCE4AQ9NXX6 385 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 DTLQ9NZJ0 730 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 XPO1O14980 1071 aaKnown RBP11.88□□□□□ -0.51
NPHP4-204ENST00000460696 MDM4O15151 490 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 MGRN1O60291 552 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 CHEK2O96017 543 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 ASGR1P07306 291 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 CSH1P0DML2 217 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 CSH2P0DML3 217 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 DNAJB2P25686 324 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 CRYMQ14894 314 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 FAM83EQ2M2I3 478 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 SPANXN3Q5MJ09 141 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 CERCAMQ5T4B2 595 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 GRTP1Q5TC63 336 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 STRADAQ7RTN6 431 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 IGDCC3Q8IVU1 814 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 MPP5Q8N3R9 675 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 NPLOC4Q8TAT6 608 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 YME1L1Q96TA2 773 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 CPNE1Q99829 537 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 ADAM2Q99965 735 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 HTATIP2Q9BUP3 242 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 TCF7L2Q9NQB0 619 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 SLC12A4Q9UP95 1085 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 SNX2O60749 519 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 S100BP04271 92 aaPredicted RBP11.87□□□□□ -0.51
NPHP4-204ENST00000460696 ACRP10323 421 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 SP100P23497 879 aaPredicted RBP11.87□□□□□ -0.51
NPHP4-204ENST00000460696 PTDSS1P48651 473 aaKnown RBP11.87□□□□□ -0.51
NPHP4-204ENST00000460696 PDAP1Q13442 181 aaKnown RBP11.87□□□□□ -0.51
NPHP4-204ENST00000460696 CNGA3Q16281 694 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 ANKRD20A4Q4UJ75 823 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 TAS2R42Q7RTR8 314 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 ZNF398Q8TD17 642 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 APBB2Q92870 758 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 MRPL1Q9BYD6 325 aaKnown RBP11.87□□□□□ -0.51
NPHP4-204ENST00000460696 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.87□□□□□ -0.51
NPHP4-204ENST00000460696 TMPRSS4Q9NRS4 437 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 SNX10Q9Y5X0 201 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 PRR5-ARHGAP8B1AHC4 643 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 E5RI56 91 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 ZNF189O75820 626 aaPredicted RBP11.87□□□□□ -0.51
NPHP4-204ENST00000460696 HSPA8P11142 646 aaKnown RBP11.87□□□□□ -0.51
NPHP4-204ENST00000460696 SKIV2L2P42285 1042 aaKnown RBP11.87□□□□□ -0.51
NPHP4-204ENST00000460696 ARHGAP8P85298 464 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 USP4Q13107 963 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 TSTA3Q13630 321 aaPredicted RBP11.87□□□□□ -0.51
NPHP4-204ENST00000460696 MAP7Q14244 749 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 ZNF618Q5T7W0 954 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 C10orf107Q8IVU9 208 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 SPATA6LQ8N4H0 392 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 ZNF395Q9H8N7 513 aaPredicted RBP11.87□□□□□ -0.51
NPHP4-204ENST00000460696 URB1O60287 2271 aaKnown RBP11.87□□□□□ -0.51
NPHP4-204ENST00000460696 IGKV6D-21A0A0A0MT36 114 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 NOL3O60936 208 aaKnown RBP11.87□□□□□ -0.51
NPHP4-204ENST00000460696 MRPS35P82673 323 aaKnown RBP11.87□□□□□ -0.51
NPHP4-204ENST00000460696 FLOT2Q14254 428 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 KCNA10Q16322 511 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.87□□□□□ -0.51
NPHP4-204ENST00000460696 SDHAF4Q5VUM1 108 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 IZUMO2Q6UXV1 221 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 FAM35AQ86V20 835 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 SLAIN1Q8ND83 568 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 CALML6Q8TD86 181 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms