RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 IRAK1P51617 712 aa21.86■■□□□ 1.09
HMGB3-205ENST00000455596 ATXN3P54252 364 aaPredicted RBP21.86■■□□□ 1.09
HMGB3-205ENST00000455596 UAP1L1Q3KQV9 507 aa21.86■■□□□ 1.09
HMGB3-205ENST00000455596 ACBD5Q5T8D3 534 aaPredicted RBP21.86■■□□□ 1.09
HMGB3-205ENST00000455596 TRNP1Q6NT89 227 aa21.86■■□□□ 1.09
HMGB3-205ENST00000455596 C14orf80Q86SX3 495 aa21.86■■□□□ 1.09
HMGB3-205ENST00000455596 DNASE2BQ8WZ79 361 aa21.86■■□□□ 1.09
HMGB3-205ENST00000455596 RPL10LQ96L21 214 aaKnown RBP21.86■■□□□ 1.09
HMGB3-205ENST00000455596 CFAP57Q96MR6 1250 aa21.86■■□□□ 1.09
HMGB3-205ENST00000455596 C11orf70Q9BRQ4 267 aa21.86■■□□□ 1.09
HMGB3-205ENST00000455596 PCED1AQ9H1Q7 454 aa21.86■■□□□ 1.09
HMGB3-205ENST00000455596 ANLNQ9NQW6 1124 aa21.86■■□□□ 1.09
HMGB3-205ENST00000455596 SCML1Q9UN30 329 aa21.86■■□□□ 1.09
HMGB3-205ENST00000455596 TP53BP1Q12888 1972 aaPredicted RBP21.85■■□□□ 1.09
HMGB3-205ENST00000455596 EDDM13A0A1B0GTR0 161 aa21.85■■□□□ 1.09
HMGB3-205ENST00000455596 TTC34A8MYJ7 566 aa21.85■■□□□ 1.09
HMGB3-205ENST00000455596 ADRB1P08588 477 aa21.85■■□□□ 1.09
HMGB3-205ENST00000455596 UNGP13051 313 aaPredicted RBP21.85■■□□□ 1.09
HMGB3-205ENST00000455596 RDXP35241 583 aaKnown RBP21.85■■□□□ 1.09
HMGB3-205ENST00000455596 CDH4P55283 916 aa21.85■■□□□ 1.09
HMGB3-205ENST00000455596 C9orf64Q5T6V5 341 aa21.85■■□□□ 1.09
HMGB3-205ENST00000455596 SLC30A5Q8TAD4 765 aa21.85■■□□□ 1.09
HMGB3-205ENST00000455596 BTBD1Q9H0C5 482 aa21.85■■□□□ 1.09
HMGB3-205ENST00000455596 FSCN3Q9NQT6 498 aa21.85■■□□□ 1.09
HMGB3-205ENST00000455596 SLCO3A1Q9UIG8 710 aa21.85■■□□□ 1.09
HMGB3-205ENST00000455596 NCKAP1Q9Y2A7 1128 aa21.85■■□□□ 1.09
HMGB3-205ENST00000455596 I6L893 689 aaPredicted RBP21.84■■□□□ 1.09
HMGB3-205ENST00000455596 SYPP08247 313 aa21.84■■□□□ 1.09
HMGB3-205ENST00000455596 ACSL1P33121 698 aa21.84■■□□□ 1.09
HMGB3-205ENST00000455596 NSFP46459 744 aaKnown RBP21.84■■□□□ 1.09
HMGB3-205ENST00000455596 NUMBP49757 651 aa21.84■■□□□ 1.09
HMGB3-205ENST00000455596 STK19P49842 368 aaPredicted RBP21.84■■□□□ 1.09
HMGB3-205ENST00000455596 LRRC31Q6UY01 552 aa21.84■■□□□ 1.09
HMGB3-205ENST00000455596 BNIPLQ7Z465 357 aa21.84■■□□□ 1.09
HMGB3-205ENST00000455596 EMC1Q8N766 993 aa21.84■■□□□ 1.09
HMGB3-205ENST00000455596 C1orf74Q96LT6 269 aa21.84■■□□□ 1.09
HMGB3-205ENST00000455596 GTPBP2Q9BX10 602 aaKnown RBP21.84■■□□□ 1.09
HMGB3-205ENST00000455596 MIR1-1HGQ9H1L0 117 aa21.84■■□□□ 1.09
HMGB3-205ENST00000455596 PABPC3Q9H361 631 aaKnown RBP21.84■■□□□ 1.09
HMGB3-205ENST00000455596 SLC25A13Q9UJS0 675 aa21.84■■□□□ 1.09
HMGB3-205ENST00000455596 ASCC3Q8N3C0 2202 aaKnown RBP21.84■■□□□ 1.09
HMGB3-205ENST00000455596 PLXNA2O75051 1894 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 A0A1B0GTW7 788 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 ARHGAP33O14559 1287 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 KCNK5O95279 499 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 SEMA4FO95754 770 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 SFSWAPQ12872 951 aaKnown RBP21.83■■□□□ 1.09
HMGB3-205ENST00000455596 USP30Q70CQ3 517 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 ZNF683Q8IZ20 524 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 OR52K2Q8NGK3 314 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 PTPRN2Q92932 1015 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 ALG14Q96F25 216 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 HAPLN3Q96S86 360 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 PCDHB18PQ96TA0 734 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 FEM1AQ9BSK4 669 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 SGK2Q9HBY8 427 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 TMPRSS4Q9NRS4 437 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 SEPT11Q9NVA2 429 aaKnown RBP21.83■■□□□ 1.09
HMGB3-205ENST00000455596 TBC1D30Q9Y2I9 924 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 SNX10Q9Y5X0 201 aa21.83■■□□□ 1.09
HMGB3-205ENST00000455596 TMEM131Q92545 1883 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 CNTN5O94779 1100 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 ENDOD1O94919 500 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 CCDC172P0C7W6 258 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 SDC4P31431 198 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 ZNF165P49910 485 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 VASPP50552 380 aaPredicted RBP21.82■■□□□ 1.08
HMGB3-205ENST00000455596 GSCP56915 257 aaPredicted RBP21.82■■□□□ 1.08
HMGB3-205ENST00000455596 ATP11AP98196 1134 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 CST6Q15828 149 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 CLEC16AQ2KHT3 1053 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 FILIP1LQ4L180 1135 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 ALFQ53S48 1182 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 LRSAM1Q6UWE0 723 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 PHLDB2Q86SQ0 1253 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 FAM131BQ86XD5 332 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 MMAAQ8IVH4 418 aaKnown RBP21.82■■□□□ 1.08
HMGB3-205ENST00000455596 ZCCHC9Q8N567 271 aaKnown RBP21.82■■□□□ 1.08
HMGB3-205ENST00000455596 GANCQ8TET4 914 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 RXFP2Q8WXD0 754 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 SNX19Q92543 992 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 MUC3BQ9H195 1237 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 C6orf106Q9H6K1 298 aaPredicted RBP21.82■■□□□ 1.08
HMGB3-205ENST00000455596 RTN4Q9NQC3 1192 aaKnown RBP21.82■■□□□ 1.08
HMGB3-205ENST00000455596 FBXL12Q9NXK8 326 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 ADAM22Q9P0K1 906 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 EIF2B4Q9UI10 523 aaKnown RBP21.82■■□□□ 1.08
HMGB3-205ENST00000455596 VPS28Q9UK41 221 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 OR51B4Q9Y5P0 310 aa21.82■■□□□ 1.08
HMGB3-205ENST00000455596 CACNA1EQ15878 2313 aa21.81■■□□□ 1.08
HMGB3-205ENST00000455596 DRGXA6NNA5 263 aa21.81■■□□□ 1.08
HMGB3-205ENST00000455596 E9PAM4 449 aa21.81■■□□□ 1.08
HMGB3-205ENST00000455596 MID1O15344 667 aa21.81■■□□□ 1.08
HMGB3-205ENST00000455596 TEX33O43247 280 aa21.81■■□□□ 1.08
HMGB3-205ENST00000455596 CALB1P05937 261 aa21.81■■□□□ 1.08
HMGB3-205ENST00000455596 RHOCP08134 193 aa21.81■■□□□ 1.08
HMGB3-205ENST00000455596 FERP16591 822 aa21.81■■□□□ 1.08
HMGB3-205ENST00000455596 NOVA1P51513 510 aaKnown RBP21.81■■□□□ 1.08
HMGB3-205ENST00000455596 PTP4A2Q12974 167 aa21.81■■□□□ 1.08
HMGB3-205ENST00000455596 CDO1Q16878 200 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms