RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 CNGA2Q16280 664 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 BMT2Q1RMZ1 405 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 CLEC16AQ2KHT3 1053 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 ZNF280BQ86YH2 543 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 MCOLN2Q8IZK6 566 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 RASGEF1CQ8N431 466 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 C1orf127Q8N9H9 656 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 CCDC124Q96CT7 223 aaKnown RBP10.88□□□□□ -0.67
TCOF1-204ENST00000427724 TMEM121Q9BTD3 319 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 CEP41Q9BYV8 373 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 NINJ2Q9NZG7 142 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 NCDNQ9UBB6 729 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 DNAJB4Q9UDY4 337 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 TUBGCP6Q96RT7 1819 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 DDX3YO15523 660 aaKnown RBP10.88□□□□□ -0.67
TCOF1-204ENST00000427724 PROSCO94903 275 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 CST3P01034 146 aaPredicted RBP10.88□□□□□ -0.67
TCOF1-204ENST00000427724 GALTP07902 379 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 VCLP18206 1134 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 INTS6LQ5JSJ4 861 aaKnown RBP10.88□□□□□ -0.67
TCOF1-204ENST00000427724 PPP1R26Q5T8A7 1209 aaPredicted RBP10.88□□□□□ -0.67
TCOF1-204ENST00000427724 DENND1BQ6P3S1 775 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 CRLF3Q8IUI8 442 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 FAM136AQ96C01 138 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 HSFY1Q96LI6 401 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 TUBB6Q9BUF5 446 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 FZD8Q9H461 694 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 XPO7Q9UIA9 1087 aaKnown RBP10.88□□□□□ -0.67
TCOF1-204ENST00000427724 GGA2Q9UJY4 613 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 C2orf81A6NN90 581 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 FOXO6A8MYZ6 492 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 MTSS1O43312 755 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 RNASEH2AO75792 299 aaKnown RBP10.87□□□□□ -0.67
TCOF1-204ENST00000427724 VHLP40337 213 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 CPA2P48052 419 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 CRELD2Q6UXH1 353 aaPredicted RBP10.87□□□□□ -0.67
TCOF1-204ENST00000427724 RGS9BPQ6ZS82 235 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 SLC22A17Q8WUG5 538 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 HMGB4Q8WW32 186 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 PPP1R16AQ96I34 528 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 IGSF21Q96ID5 467 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 TSSK1BQ9BXA7 367 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 Q9H521 79 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 UBA2Q9UBT2 640 aaPredicted RBP10.87□□□□□ -0.67
TCOF1-204ENST00000427724 A0A1W2PQH9 124 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 SNX3O60493 162 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 PGM1P36871 562 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 FOXD4Q12950 439 aaPredicted RBP10.87□□□□□ -0.67
TCOF1-204ENST00000427724 GRM2Q14416 872 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 ATG16L1Q676U5 607 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 TXNDC8Q6A555 127 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 EXOC3L1Q86VI1 746 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 RASSF3Q86WH2 238 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 C12orf50Q8NA57 414 aaPredicted RBP10.87□□□□□ -0.67
TCOF1-204ENST00000427724 TSTD1Q8NFU3 115 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 WNT8BQ93098 351 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 EXOC2Q96KP1 924 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 MAGEB18Q96M61 343 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 ANLNQ9NQW6 1124 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 GMEB2Q9UKD1 530 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 DHX15O43143 795 aaKnown RBP10.87□□□□□ -0.67
TCOF1-204ENST00000427724 MSI1O43347 362 aaKnown RBP10.87□□□□□ -0.67
TCOF1-204ENST00000427724 NUDT17P0C025 328 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 ZSCAN5DPP0CG00 497 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 CHRM1P11229 460 aaPredicted RBP10.87□□□□□ -0.67
TCOF1-204ENST00000427724 NOS2P35228 1153 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 MAP3K10Q02779 954 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 SHHQ15465 462 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 ANGPTL8Q6UXH0 198 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 HJURPQ8NCD3 748 aaPredicted RBP10.87□□□□□ -0.67
TCOF1-204ENST00000427724 DTNBP1Q96EV8 351 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 PCDHB18PQ96TA0 734 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 GPR88Q9GZN0 384 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 GKN1Q9NS71 199 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 OR12D3Q9UGF7 316 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 LIMD1Q9UGP4 676 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 PCYOX1Q9UHG3 505 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 YIPF1Q9Y548 306 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 KCNK1O00180 336 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 PRPF4O43172 522 aaKnown RBP eCLIP10.87□□□□□ -0.67
TCOF1-204ENST00000427724 LSM8O95777 96 aaKnown RBP10.87□□□□□ -0.67
TCOF1-204ENST00000427724 KRT16P08779 473 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 SLC5A3P53794 718 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 NUDCD3Q8IVD9 361 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 TDHQ8IZJ6 230 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 TFB1MQ8WVM0 346 aaKnown RBP10.87□□□□□ -0.67
TCOF1-204ENST00000427724 HERVK_113Q902F9 699 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 SNX27Q96L92 541 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 POLMQ9NP87 494 aaPredicted RBP10.87□□□□□ -0.67
TCOF1-204ENST00000427724 SIX2Q9NPC8 291 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 GULP1Q9UBP9 304 aa10.87□□□□□ -0.67
TCOF1-204ENST00000427724 PIAS1O75925 651 aa10.86□□□□□ -0.67
TCOF1-204ENST00000427724 AMPD1P23109 780 aa10.86□□□□□ -0.67
TCOF1-204ENST00000427724 CORO1AP31146 461 aaKnown RBP10.86□□□□□ -0.67
TCOF1-204ENST00000427724 CACNA2D1P54289 1103 aa10.86□□□□□ -0.67
TCOF1-204ENST00000427724 FMO1Q01740 532 aa10.86□□□□□ -0.67
TCOF1-204ENST00000427724 CCNG2Q16589 344 aa10.86□□□□□ -0.67
TCOF1-204ENST00000427724 FAM46CQ5VWP2 391 aa10.86□□□□□ -0.67
TCOF1-204ENST00000427724 ZNF513Q8N8E2 541 aaPredicted RBP10.86□□□□□ -0.67
TCOF1-204ENST00000427724 OR14C36Q8NHC7 312 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms