RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 HTRA2O43464 458 aaPredicted RBP10.93□□□□□ -0.66
USP54-204ENST00000422491 MED7O43513 233 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 ATE1O95260 518 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 FUCA1P04066 466 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 TCN1P20061 433 aaPredicted RBP10.93□□□□□ -0.66
USP54-204ENST00000422491 FGFR3P22607 806 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 RPL10P27635 214 aaKnown RBP10.93□□□□□ -0.66
USP54-204ENST00000422491 BCAP31P51572 246 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 FKBP1AP62942 108 aaKnown RBP10.93□□□□□ -0.66
USP54-204ENST00000422491 EMC2Q15006 297 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 PDK2Q15119 407 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 KCTD21Q4G0X4 260 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 FAM102AQ5T9C2 384 aaPredicted RBP10.93□□□□□ -0.66
USP54-204ENST00000422491 STRIP1Q5VSL9 837 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 LYSMD3Q7Z3D4 306 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 CMC1Q7Z7K0 106 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 CCDC60Q8IWA6 550 aaPredicted RBP10.93□□□□□ -0.66
USP54-204ENST00000422491 TBC1D15Q8TC07 691 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 ARNTL2Q8WYA1 636 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 NEURL2Q9BR09 285 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 ADPGKQ9BRR6 497 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 PAIP1Q9H074 479 aaKnown RBP10.93□□□□□ -0.66
USP54-204ENST00000422491 ZBTB26Q9HCK0 441 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 GPATCH2LQ9NWQ4 482 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 IPO11Q9UI26 975 aaKnown RBP10.93□□□□□ -0.66
USP54-204ENST00000422491 ZNF646O15015 1829 aaPredicted RBP10.93□□□□□ -0.66
USP54-204ENST00000422491 TCAF2A6NFQ2 919 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 LRRIQ4A6NIV6 560 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 TRIM38O00635 465 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 HDAC3O15379 428 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 PRPSAP2O60256 369 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 CHRNGP07510 517 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 OCM2P0CE71 109 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 OCMP0CE72 109 aaPredicted RBP10.93□□□□□ -0.66
USP54-204ENST00000422491 ZNF24P17028 368 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 GPD1P21695 349 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 MPSTP25325 297 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 NAMPTP43490 491 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 KCNC4Q03721 635 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 GRM1Q13255 1194 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 ART3Q13508 389 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 MTERF2Q49AM1 385 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 MTX3Q5HYI7 312 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 NHSL2Q5HYW2 709 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 NANOGP8Q6NSW7 305 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 CASC4Q6P4E1 433 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 CDKL3Q8IVW4 592 aaPredicted RBP10.93□□□□□ -0.66
USP54-204ENST00000422491 SLCO4A1Q96BD0 722 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 PLEKHA8Q96JA3 519 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 PPP1R36Q96LQ0 422 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 PPP1R10Q96QC0 940 aaKnown RBP10.93□□□□□ -0.66
USP54-204ENST00000422491 DOK1Q99704 481 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 EFCAB1Q9HAE3 211 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 PXMP2Q9NR77 195 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 KIAA1522Q9P206 1035 aaPredicted RBP10.93□□□□□ -0.66
USP54-204ENST00000422491 ITGB1BP2Q9UKP3 347 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 TRIM64A6NGJ6 449 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 MLNP12872 115 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 YBX3P16989 372 aaKnown RBP eCLIP10.92□□□□□ -0.66
USP54-204ENST00000422491 RAP1GAPP47736 663 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 RXRGP48443 463 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 PSMD8P48556 350 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 RHDQ02161 417 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 NSUN2Q08J23 767 aaKnown RBP eCLIP10.92□□□□□ -0.66
USP54-204ENST00000422491 ZNF699Q32M78 642 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 TMEM198Q66K66 360 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 PTAR1Q7Z6K3 402 aaPredicted RBP10.92□□□□□ -0.66
USP54-204ENST00000422491 CENPSQ8N2Z9 138 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 FAM47BQ8NA70 645 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 DEPTORQ8TB45 409 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 SLC7A14Q8TBB6 771 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 RXFP2Q8WXD0 754 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 UHRF1Q96T88 793 aaPredicted RBP10.92□□□□□ -0.66
USP54-204ENST00000422491 RMDN3Q96TC7 470 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 GATA5Q9BWX5 397 aaPredicted RBP10.92□□□□□ -0.66
USP54-204ENST00000422491 ILKAPQ9H0C8 392 aaPredicted RBP10.92□□□□□ -0.66
USP54-204ENST00000422491 VPS33BQ9H267 617 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 RPF2Q9H7B2 306 aaKnown RBP10.92□□□□□ -0.66
USP54-204ENST00000422491 SUCOQ9UBS9 1254 aaKnown RBP10.92□□□□□ -0.66
USP54-204ENST00000422491 FADS3Q9Y5Q0 445 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 A0A087WXM4 84 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 RBM47A0AV96 593 aaKnown RBP10.92□□□□□ -0.66
USP54-204ENST00000422491 K7EPI3 171 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 GRID2O43424 1007 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 TRIM13O60858 407 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 LTFP02788 710 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 GP5P40197 560 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 ESRRGP62508 458 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 ORC1Q13415 861 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 TRIM25Q14258 630 aaKnown RBP10.92□□□□□ -0.66
USP54-204ENST00000422491 PTK2BQ14289 1009 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 SMAD1Q15797 465 aaKnown RBP10.92□□□□□ -0.66
USP54-204ENST00000422491 CA9Q16790 459 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 CDO1Q16878 200 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 DCAF6Q58WW2 860 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 SEL1L3Q68CR1 1132 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 HMBOX1Q6NT76 420 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 TMEM53Q6P2H8 277 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 CPXCR1Q8N123 301 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 CNTD1Q8N815 330 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms