RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 KCTD13Q8WZ19 329 aa13.36□□□□□ -0.27
LINC00339-202ENST00000416769 TTC17Q96AE7 1141 aa13.36□□□□□ -0.27
LINC00339-202ENST00000416769 CNDP2Q96KP4 475 aaKnown RBP13.36□□□□□ -0.27
LINC00339-202ENST00000416769 RPL10LQ96L21 214 aaKnown RBP13.36□□□□□ -0.27
LINC00339-202ENST00000416769 FAM129BQ96TA1 746 aa13.36□□□□□ -0.27
LINC00339-202ENST00000416769 ELF4Q99607 663 aaPredicted RBP13.36□□□□□ -0.27
LINC00339-202ENST00000416769 ACE2Q9BYF1 805 aaPredicted RBP13.36□□□□□ -0.27
LINC00339-202ENST00000416769 MIS12Q9H081 205 aa13.36□□□□□ -0.27
LINC00339-202ENST00000416769 AASDHPPTQ9NRN7 309 aa13.36□□□□□ -0.27
LINC00339-202ENST00000416769 ABCC13Q9NSE7 274 aa13.36□□□□□ -0.27
LINC00339-202ENST00000416769 HESX1Q9UBX0 185 aa13.36□□□□□ -0.27
LINC00339-202ENST00000416769 LIMA1Q9UHB6 759 aaKnown RBP13.36□□□□□ -0.27
LINC00339-202ENST00000416769 NAALADL1Q9UQQ1 740 aa13.36□□□□□ -0.27
LINC00339-202ENST00000416769 MGAQ8IWI9 3026 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 TDRD6O60522 2096 aaKnown RBP13.35□□□□□ -0.27
LINC00339-202ENST00000416769 M0QYV0 167 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 STX10O60499 249 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 ATP5BP06576 529 aaKnown RBP13.35□□□□□ -0.27
LINC00339-202ENST00000416769 ABCG1P45844 678 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 MTIF2P46199 727 aaKnown RBP13.35□□□□□ -0.27
LINC00339-202ENST00000416769 ZBTB16Q05516 673 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 TARDBPQ13148 414 aaKnown RBP eCLIP13.35□□□□□ -0.27
LINC00339-202ENST00000416769 POM121L1PQ3SYA9 428 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 HSP90AA4PQ58FG1 418 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 DCAF6Q58WW2 860 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 HES3Q5TGS1 186 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 TMEM270Q6UE05 265 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 SPATS2Q86XZ4 545 aaKnown RBP13.35□□□□□ -0.27
LINC00339-202ENST00000416769 SCUBE3Q8IX30 993 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 SLC35F5Q8WV83 523 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 TUBGCP2Q9BSJ2 902 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 CNGB3Q9NQW8 809 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 ERVW-1Q9UQF0 538 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 COQ4Q9Y3A0 265 aa13.35□□□□□ -0.27
LINC00339-202ENST00000416769 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.35□□□□□ -0.27
LINC00339-202ENST00000416769 KALRNO60229 2985 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 ZNF462Q96JM2 2506 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 PMM2O15305 246 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 PAPSS1O43252 624 aaPredicted RBP13.34□□□□□ -0.27
LINC00339-202ENST00000416769 SDC3O75056 442 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 RFPL3O75679 317 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 LDOC1O95751 146 aaPredicted RBP13.34□□□□□ -0.27
LINC00339-202ENST00000416769 LATS1O95835 1130 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 LTFP02788 710 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 ITGAVP06756 1048 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 SETSIPP0DME0 302 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 VDRP11473 427 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 EPHA8P29322 1005 aaPredicted RBP13.34□□□□□ -0.27
LINC00339-202ENST00000416769 MAT2AP31153 395 aaKnown RBP13.34□□□□□ -0.27
LINC00339-202ENST00000416769 SLC8A1P32418 973 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 IRAK1P51617 712 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 ADPRHP54922 357 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 SLC8A3P57103 927 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 KCNH2Q12809 1159 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 MAN2A1Q16706 1144 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 MS4A13Q5J8X5 152 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 SYPL2Q5VXT5 272 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 LCLAT1Q6UWP7 414 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 USP30Q70CQ3 517 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 KANSL1Q7Z3B3 1105 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 TAC4Q86UU9 113 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 TMPRSS12Q86WS5 348 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 HJURPQ8NCD3 748 aaPredicted RBP13.34□□□□□ -0.27
LINC00339-202ENST00000416769 FIBINQ8TAL6 211 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 SLC35C1Q96A29 364 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 FBRSQ9HAH7 460 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 SUN2Q9UH99 717 aa13.34□□□□□ -0.27
LINC00339-202ENST00000416769 CFAP46Q8IYW2 2715 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 RNF103O00237 685 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 RTN2O75298 545 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 TPM2P07951 284 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 ATP1A3P13637 1013 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 JUPP14923 745 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 ABCB4P21439 1286 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 DRD3P35462 400 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 SLC11A2P49281 568 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 COPB1P53618 953 aaKnown RBP13.33□□□□□ -0.28
LINC00339-202ENST00000416769 NXPH1P58417 271 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 CDH18Q13634 790 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 KRT31Q15323 416 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 VWA3BQ502W6 1294 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 MPP7Q5T2T1 576 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 RAP1GAP2Q684P5 730 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 FBXL19Q6PCT2 694 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 APTXQ7Z2E3 356 aaKnown RBP13.33□□□□□ -0.28
LINC00339-202ENST00000416769 ARHGEF19Q8IW93 802 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 LGI2Q8N0V4 545 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 TTC39CQ8N584 583 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 OR52K2Q8NGK3 314 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 OR14C36Q8NHC7 312 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 TSC1Q92574 1164 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 GOLGA1Q92805 767 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 PTPRN2Q92932 1015 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 SLC39A13Q96H72 371 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 FAXDC2Q96IV6 333 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 SERAC1Q96JX3 654 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 OMDQ99983 421 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 NDST4Q9H3R1 872 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 PRORYQ9H606 182 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 TJP2Q9UDY2 1190 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms