RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 IZUMO3Q5VZ72 239 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 TSHZ1Q6ZSZ6 1077 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 CIR1Q86X95 450 aaPredicted RBP6.96□□□□□ -1.3
USP40-202ENST00000409945 SMAP1Q8IYB5 467 aaPredicted RBP6.96□□□□□ -1.3
USP40-202ENST00000409945 CFAP52Q8N1V2 620 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 FITM2Q8N6M3 262 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 FAM184AQ8NB25 1140 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 NLGN4YQ8NFZ3 816 aaPredicted RBP6.96□□□□□ -1.3
USP40-202ENST00000409945 SCAMP4Q969E2 229 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 GTF3C6Q969F1 213 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 PGBD1Q96JS3 809 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 HDAC6Q9UBN7 1215 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 USP15Q9Y4E8 981 aaPredicted RBP6.96□□□□□ -1.3
USP40-202ENST00000409945 SCN10AQ9Y5Y9 1956 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 GRIN2DO15399 1336 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 CAPN14A8MX76 684 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 GRXCR1A8MXD5 290 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 KIF28PB7ZC32 967 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 PYCARD-AS1I3L0S3 204 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 HAS3O00219 553 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 GCFC2P16383 781 aaKnown RBP6.95□□□□□ -1.3
USP40-202ENST00000409945 ACO1P21399 889 aaKnown RBP6.95□□□□□ -1.3
USP40-202ENST00000409945 KRT2P35908 639 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 MCM2P49736 904 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 PPFIA1Q13136 1202 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 SHHQ15465 462 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 SURF1Q15526 300 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 RAB30Q15771 203 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 PRR16Q569H4 304 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 TAF2Q6P1X5 1199 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.95□□□□□ -1.3
USP40-202ENST00000409945 KCTD20Q7Z5Y7 419 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 KAT2BQ92831 832 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 SNX22Q96L94 193 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 C20orf173Q96LM9 149 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 TTYH3Q9C0H2 523 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 CHST8Q9H2A9 424 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 AGO4Q9HCK5 861 aaKnown RBP6.95□□□□□ -1.3
USP40-202ENST00000409945 ETAA1Q9NY74 926 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 LTBP2Q14767 1821 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 TBC1D4O60343 1298 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 DKC1O60832 514 aaKnown RBP eCLIP6.95□□□□□ -1.3
USP40-202ENST00000409945 BAIAP3O94812 1187 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 BAG4O95429 457 aaKnown RBP6.95□□□□□ -1.3
USP40-202ENST00000409945 MT-ND5P03915 603 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 SMIM10L2AP0DMW4 78 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 SMIM10L2BP0DMW5 78 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 SFNP31947 248 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 THPOP40225 353 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 ZNF134P52741 427 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 RNASE9P60153 205 aaKnown RBP6.95□□□□□ -1.3
USP40-202ENST00000409945 ACTR2P61160 394 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 PDCD4Q53EL6 469 aaKnown RBP6.95□□□□□ -1.3
USP40-202ENST00000409945 AGAP9Q5VTM2 703 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 MOXD1Q6UVY6 613 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 LRRC8DQ7L1W4 858 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 PLPPR4Q7Z2D5 763 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 OR56A1Q8NGH5 318 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 TBCKQ8TEA7 893 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 MIEF2Q96C03 454 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 MNTQ99583 582 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 LLPHQ9BRT6 129 aaKnown RBP6.95□□□□□ -1.3
USP40-202ENST00000409945 C16orf70Q9BSU1 422 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 TEKT3Q9BXF9 490 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 ZNF768Q9H5H4 540 aaKnown RBP6.95□□□□□ -1.3
USP40-202ENST00000409945 CD248Q9HCU0 757 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 RLIMQ9NVW2 624 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 XPR1Q9UBH6 696 aa6.95□□□□□ -1.3
USP40-202ENST00000409945 KAT6AQ92794 2004 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 RSPH10B2B2RC85 870 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 DDX39AO00148 427 aaKnown RBP6.94□□□□□ -1.3
USP40-202ENST00000409945 ATP9AO75110 1047 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 NDST3O95803 873 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 IQCF3P0C7M6 154 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 RSPH10BP0C881 870 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 COMTP21964 271 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 GCSHP23434 173 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 ITGB8P26012 769 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 CIITAP33076 1130 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 HSPA7P48741 367 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 JAK3P52333 1124 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 MAPK10P53779 464 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 HSD11B2P80365 405 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 OCA2Q04671 838 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 ME3Q16798 604 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 MPEG1Q2M385 716 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 ZIK1Q3SY52 487 aaPredicted RBP6.94□□□□□ -1.3
USP40-202ENST00000409945 LRCH2Q5VUJ6 765 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 SPOCD1Q6ZMY3 1216 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 LRRC55Q6ZSA7 311 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 FAM43BQ6ZT52 329 aaPredicted RBP6.94□□□□□ -1.3
USP40-202ENST00000409945 DEFB128Q7Z7B8 93 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 NEK8Q86SG6 692 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 ATP11CQ8NB49 1132 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 HERVK_113Q902F9 699 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 RIT2Q99578 217 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 ZNF302Q9NR11 478 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 ST6GALNAC2Q9UJ37 374 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 TUBE1Q9UJT0 475 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 CHST2Q9Y4C5 530 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms