RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 SALL4Q9UJQ4 1053 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 STOML2Q9UJZ1 356 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 STAP1Q9ULZ2 295 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 A0A0U1RQJ8 604 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 E2F8A0AVK6 867 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 FAM170AA1A519 330 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 KCNU1A8MYU2 1149 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 CAPN9O14815 690 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 STC2O76061 302 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 F9P00740 461 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 CYP17A1P05093 508 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 SDC4P31431 198 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 PCK1P35558 622 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 OPRD1P41143 372 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 MAGEA9P43362 315 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 GRSF1Q12849 480 aaKnown RBP eCLIP9.52□□□□□ -0.894e-9■■■■■ 30.8
VPS53-203ENST00000401468 MTA1Q13330 715 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 CKAP5Q14008 2032 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 PIGHQ14442 188 aaPredicted RBP9.52□□□□□ -0.89
VPS53-203ENST00000401468 SF3A2Q15428 464 aaKnown RBP9.52□□□□□ -0.89
VPS53-203ENST00000401468 GAB4Q2WGN9 574 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 BRMS1LQ5PSV4 323 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 TCEAL6Q6IPX3 200 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 DCUN1D2Q6PH85 259 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 HTR3DQ70Z44 454 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 PHLDB2Q86SQ0 1253 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 KBTBD6Q86V97 674 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 CPA6Q8N4T0 437 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 RNF10Q8N5U6 811 aaKnown RBP9.52□□□□□ -0.89
VPS53-203ENST00000401468 RNF139Q8WU17 664 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 OSCP1Q8WVF1 389 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 TCEAL3Q969E4 200 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 FCRL2Q96LA5 508 aaPredicted RBP9.52□□□□□ -0.89
VPS53-203ENST00000401468 CFAP57Q96MR6 1250 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 ZNF830Q96NB3 372 aaPredicted RBP9.52□□□□□ -0.89
VPS53-203ENST00000401468 NCAPGQ9BPX3 1015 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 RXFP3Q9NSD7 469 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 PIGVQ9NUD9 493 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 PGPEP1Q9NXJ5 209 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 ARHGEF38Q9NXL2 777 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 MYO1AQ9UBC5 1043 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 IP6K2Q9UHH9 426 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 ANAPC7Q9UJX3 599 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 TFR2Q9UP52 801 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 PPP2R2CQ9Y2T4 447 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 DUSP10Q9Y6W6 482 aa9.52□□□□□ -0.89
VPS53-203ENST00000401468 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.51□□□□□ -0.89
VPS53-203ENST00000401468 FAM181BA6NEQ2 426 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 I6L893 689 aaPredicted RBP9.51□□□□□ -0.89
VPS53-203ENST00000401468 M0QYT0 321 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 TRDMT1O14717 391 aaKnown RBP9.51□□□□□ -0.89
VPS53-203ENST00000401468 CCP110O43303 1012 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 MSI1O43347 362 aaKnown RBP9.51□□□□□ -0.89
VPS53-203ENST00000401468 LRCH4O75427 683 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 PROSCO94903 275 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 KLKB1P03952 638 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 PTMAP06454 111 aaKnown RBP9.51□□□□□ -0.89
VPS53-203ENST00000401468 SLC2A3P11169 496 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 HNRNPLP14866 589 aaKnown RBP eCLIP9.51□□□□□ -0.89
VPS53-203ENST00000401468 TGM1P22735 817 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 GBP1P32455 592 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 RDXP35241 583 aaKnown RBP9.51□□□□□ -0.89
VPS53-203ENST00000401468 WASP42768 502 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 AIF1P55008 147 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 RNASE9P60153 205 aaKnown RBP9.51□□□□□ -0.89
VPS53-203ENST00000401468 NRG1Q02297 640 aaPredicted RBP9.51□□□□□ -0.89
VPS53-203ENST00000401468 SCAPQ12770 1279 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 EFEMP1Q12805 493 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 C15orf59Q2T9L4 293 aaPredicted RBP9.51□□□□□ -0.89
VPS53-203ENST00000401468 DGKKQ5KSL6 1271 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 ACBD5Q5T8D3 534 aaPredicted RBP9.51□□□□□ -0.89
VPS53-203ENST00000401468 SH3PXD2AQ5TCZ1 1133 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 NUGGCQ68CJ6 796 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 RNF43Q68DV7 783 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 C11orf63Q6NUN7 778 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 RSRC2Q7L4I2 434 aaKnown RBP9.51□□□□□ -0.89
VPS53-203ENST00000401468 SLFN11Q7Z7L1 901 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 FRMD1Q8N878 549 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 LRRC57Q8N9N7 239 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 ZSCAN1Q8NBB4 408 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 TPCN2Q8NHX9 752 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 FAM71BQ8TC56 605 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 UBE2Q2Q8WVN8 375 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 CD101Q93033 1021 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 ATP2A3Q93084 1043 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 NTAN1Q96AB6 310 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 OTUB2Q96DC9 234 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 KCTD15Q96SI1 283 aaPredicted RBP9.51□□□□□ -0.89
VPS53-203ENST00000401468 TSGA10Q9BZW7 698 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 ARRDC1-AS1Q9H2J1 176 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 SEMA4AQ9H3S1 761 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.51□□□□□ -0.89
VPS53-203ENST00000401468 CTTNBP2NLQ9P2B4 639 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 SFMBT1Q9UHJ3 866 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 GMEB2Q9UKD1 530 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 RAB23Q9ULC3 237 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 SLC8A2Q9UPR5 921 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.51□□□□□ -0.89
VPS53-203ENST00000401468 PLXNA2O75051 1894 aa9.51□□□□□ -0.89
VPS53-203ENST00000401468 TDRD6O60522 2096 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms