RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 DOLKQ9UPQ8 538 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 BAIAP2Q9UQB8 552 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 PCDHB7Q9Y5E2 793 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 ZNF806P0C7X5 589 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 MIPP30301 263 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 MTA1Q13330 715 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 ZNF470Q6ECI4 717 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 ATG14Q6ZNE5 492 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 OTOP1Q7RTM1 612 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 NECAB2Q7Z6G3 386 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 RNF148Q8N7C7 305 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 PIWIL2Q8TC59 973 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 ACTRT2Q8TDY3 377 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 POLR1BQ9H9Y6 1135 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 PLGRKTQ9HBL7 147 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 ZFYVE28Q9HCC9 887 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 LIMD1Q9UGP4 676 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 CEP152O94986 1710 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 CCDC182A6NF36 153 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 CD3EAPO15446 510 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 CDH3P22223 829 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 YWHAZP63104 245 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 USF2Q15853 346 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 TYW3Q6IPR3 259 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 TTC27Q6P3X3 843 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 ZCCHC23Q6ZST2 131 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 ADGRA1Q86SQ6 560 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 ZDHHC13Q8IUH4 622 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 SPPL2AQ8TCT8 520 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 CITED4Q96RK1 184 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 MROH8Q9H579 483 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 LNPEPQ9UIQ6 1025 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 SYNCRIPO60506 623 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 NPM3O75607 178 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 MICAL2O94851 1124 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 IL6P05231 212 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 NUDT17P0C025 328 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 AMPD1P23109 780 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 RPA3P35244 121 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 MAGEA10P43363 369 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 ZSWIM7Q19AV6 140 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 SPANXN2Q5MJ10 180 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 KCNT2Q6UVM3 1135 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 CYP2R1Q6VVX0 501 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 FAM228AQ86W67 206 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 PRMT6Q96LA8 375 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 C12orf4Q9NQ89 552 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 KLHL28Q9NXS3 571 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 TRPM5Q9NZQ8 1165 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 SPEF1Q9Y4P9 236 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 A0A087WZ62 844 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 CHADO15335 359 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 HS6ST1O60243 411 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 VAPBO95292 243 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 PIGNO95427 931 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 ANXA6P08133 673 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 TPH1P17752 444 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 RPL14P50914 215 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 ITGA1P56199 1179 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 BTN3A2P78410 334 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 TRAP1Q12931 704 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 LRRC38Q5VT99 294 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 NT5DC4Q86YG4 428 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 CAMK1DQ8IU85 385 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 MAP4K3Q8IVH8 894 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 DPP10Q8N608 796 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 SYT15Q9BQS2 421 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 FDXACB1Q9BRP7 624 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 A1CFQ9NQ94 594 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 CCDC167Q9P0B6 97 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 FRMPD1Q5SYB0 1578 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 ALDH1A2O94788 518 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 LRG1P02750 347 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 VTNP04004 478 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 ABCB1P08183 1280 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 CASP5P51878 434 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 CHN2P52757 468 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 MRPS22P82650 360 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 PRAMEF18Q5VWM3 479 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 ZNF544Q6NX49 715 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 PGBD2Q6P3X8 592 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 RASSF6Q6ZTQ3 369 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 C10orf53Q8N6V4 93 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 DNERQ8NFT8 737 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 MRPS31Q92665 395 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 CPB2Q96IY4 423 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 LRMDAQ9H2I8 198 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 KCNQ5Q9NR82 932 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 IL17RBQ9NRM6 502 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 VPS28Q9UK41 221 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 PRDM4Q9UKN5 801 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 PADI4Q9UM07 663 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 ASTN2O75129 1339 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 A0A087X1B8 175 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 HMGCRP04035 888 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 TGFB3P10600 412 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 GRK3P35626 688 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 SLC12A3P55017 1021 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 PPATQ06203 517 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 WDR59Q6PJI9 974 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms