RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ARHGAP26Q9UNA1 814 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 TIMM13Q9Y5L4 95 aaPredicted RBP12.41□□□□□ -0.42
CLIP3-201ENST00000360535 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.41□□□□□ -0.42
CLIP3-201ENST00000360535 SPTLC1O15269 473 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 RECQL4O94761 1208 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 PRKCGP05129 697 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 VCLP18206 1134 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 BCAT1P54687 386 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 NAGLUP54802 743 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 PKDCCQ504Y2 493 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 MTHFD1LQ6UB35 978 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 SATL1Q86VE3 508 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 PNPLA1Q8N8W4 532 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 ICA1LQ8NDH6 482 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 APBA2Q99767 749 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 TCF7L2Q9NQB0 619 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 APPL1Q9UKG1 709 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 GJD2Q9UKL4 321 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 CNMDO75829 334 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 C2P06681 752 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 GRK2P25098 689 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 CNTFP26441 200 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 MAP3K7CLP57077 242 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 BTKQ06187 659 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 MSLNQ13421 630 aaPredicted RBP12.4□□□□□ -0.42
CLIP3-201ENST00000360535 FAM91A1Q658Y4 838 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 IYDQ6PHW0 289 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 SLC26A9Q7LBE3 791 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 PDSS2Q86YH6 399 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 RNF135Q8IUD6 432 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 ANKRD52Q8NB46 1076 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 EDEM1Q92611 657 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 CNBD2Q96M20 576 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 RNF39Q9H2S5 420 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 VRTNQ9H8Y1 702 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 COPS7BQ9H9Q2 264 aaPredicted RBP12.4□□□□□ -0.42
CLIP3-201ENST00000360535 GPRC5DQ9NZD1 345 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 ZBTB24O43167 697 aaPredicted RBP12.4□□□□□ -0.42
CLIP3-201ENST00000360535 SPRP35270 261 aaPredicted RBP12.4□□□□□ -0.42
CLIP3-201ENST00000360535 MAGEA6P43360 314 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.4□□□□□ -0.42
CLIP3-201ENST00000360535 ZNF484Q5JVG2 852 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 SIX6OS1Q8N1H7 587 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.4□□□□□ -0.42
CLIP3-201ENST00000360535 ZSCAN18Q8TBC5 510 aaPredicted RBP12.4□□□□□ -0.42
CLIP3-201ENST00000360535 NR1H4Q96RI1 486 aaPredicted RBP12.4□□□□□ -0.42
CLIP3-201ENST00000360535 CENPKQ9BS16 269 aa12.4□□□□□ -0.42
CLIP3-201ENST00000360535 GATA5Q9BWX5 397 aaPredicted RBP12.4□□□□□ -0.42
CLIP3-201ENST00000360535 ANKRD12Q6UB98 2062 aa12.4□□□□□ -0.43
CLIP3-201ENST00000360535 DDNO94850 711 aaPredicted RBP12.39□□□□□ -0.43
CLIP3-201ENST00000360535 MT-CO1P00395 513 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 ERCC2P18074 760 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 RAB27AP51159 221 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 PDK1Q15118 436 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 LIN52Q52LA3 116 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 SH3D19Q5HYK7 790 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 FBXO47Q5MNV8 452 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 TIFABQ6ZNK6 161 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 FBXW8Q8N3Y1 598 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 RAB3IL1Q8TBN0 382 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 URGCPQ8TCY9 931 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 IFT43Q96FT9 208 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 C1orf21Q9H246 121 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 NMRAL1Q9HBL8 299 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 GPAMQ9HCL2 828 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 MKS1Q9NXB0 559 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 TLK1Q9UKI8 766 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 FZD10Q9ULW2 581 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 PCDHGB4Q9UN71 923 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 PIN4Q9Y237 131 aaKnown RBP12.39□□□□□ -0.43
CLIP3-201ENST00000360535 DTNAQ9Y4J8 743 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 PCDHGB5Q9Y5G0 923 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 KPNA7A9QM74 516 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 KIF3CO14782 793 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 PIGNO95427 931 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 ARSAP15289 507 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 PTPN9P43378 593 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 SLC26A2P50443 739 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 FOLH1Q04609 750 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 ARHGAP1Q07960 439 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 USP10Q14694 798 aaKnown RBP12.39□□□□□ -0.43
CLIP3-201ENST00000360535 PDK3Q15120 406 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 GRIK4Q16099 956 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 GSTA3Q16772 222 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 FSCBQ5H9T9 825 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 ARMC3Q5W041 872 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 FAM43BQ6ZT52 329 aaPredicted RBP12.39□□□□□ -0.43
CLIP3-201ENST00000360535 RNF34Q969K3 372 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 RCN3Q96D15 328 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 SIK2Q9H0K1 926 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 CDH19Q9H159 772 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 ATXN3LQ9H3M9 355 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 PIGVQ9NUD9 493 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 TMEM233B4DJY2 109 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 FZD9O00144 591 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 JCHAINP01591 159 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 SRGAP2BP0DMP2 458 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 UQCRBP14927 111 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 MATKP42679 507 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 MPP3Q13368 585 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms