RNA–Protein interactions for RNA: ENST00000350028.4

SAMM50-201, Transcript of SAMM50 sorting and assembly machinery component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SAMM50, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMM50-201ENST00000350028 FITM2Q8N6M3 262 aa17.09■□□□□ 0.33
SAMM50-201ENST00000350028 ACMSDQ8TDX5 336 aa17.09■□□□□ 0.33
SAMM50-201ENST00000350028 AGAP3Q96P47 875 aa17.09■□□□□ 0.33
SAMM50-201ENST00000350028 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.09■□□□□ 0.33
SAMM50-201ENST00000350028 NMUR1Q9HB89 426 aa17.09■□□□□ 0.33
SAMM50-201ENST00000350028 NEU3Q9UQ49 428 aa17.09■□□□□ 0.33
SAMM50-201ENST00000350028 PCDHB7Q9Y5E2 793 aa17.09■□□□□ 0.33
SAMM50-201ENST00000350028 HMX2A2RU54 273 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 CFAP73A6NFT4 308 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 ARHGAP42A6NI28 874 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 ENPP3O14638 875 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 KLF11O14901 512 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 DCTN3O75935 186 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 IL1BP01584 269 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 JCHAINP01591 159 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 NEFHP12036 1026 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 NFKB1P19838 968 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 DNAJB2P25686 324 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 CRHR1P34998 444 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 PRMT2P55345 433 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 MRPL58Q14197 206 aaKnown RBP17.08■□□□□ 0.32
SAMM50-201ENST00000350028 SETDB1Q15047 1291 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 MROH9Q5TGP6 573 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 PACS1Q6VY07 963 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 KLHDC8BQ8IXV7 354 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 ZSCAN18Q8TBC5 510 aaPredicted RBP17.08■□□□□ 0.32
SAMM50-201ENST00000350028 C10orf82Q8WW14 230 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 CELF6Q96J87 481 aaKnown RBP17.08■□□□□ 0.32
SAMM50-201ENST00000350028 FCRL2Q96LA5 508 aaPredicted RBP17.08■□□□□ 0.32
SAMM50-201ENST00000350028 MLPHQ9BV36 600 aaPredicted RBP17.08■□□□□ 0.32
SAMM50-201ENST00000350028 SLC40A1Q9NP59 571 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 GGT7Q9UJ14 662 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 VANGL2Q9ULK5 521 aa17.08■□□□□ 0.32
SAMM50-201ENST00000350028 KCNU1A8MYU2 1149 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 CACNG3O60359 315 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 RASSF9O75901 435 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 SLC2A3P11169 496 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 CDK7P50613 346 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 CTXN3Q4LDR2 81 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 STXBP5Q5T5C0 1151 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 FBXW10Q5XX13 1052 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 CDHR3Q6ZTQ4 885 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 ARHGAP12Q8IWW6 846 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 NDUFAF2Q8N183 169 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 DNAAF3Q8N9W5 541 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 CERS2Q96G23 380 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 C1orf74Q96LT6 269 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 TSSK1BQ9BXA7 367 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 PIH1D1Q9NWS0 290 aaKnown RBP17.07■□□□□ 0.32
SAMM50-201ENST00000350028 IL37Q9NZH6 218 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 FNIP2Q9P278 1114 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 ADAM28Q9UKQ2 775 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 RPS6KL1Q9Y6S9 549 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 MYO16Q9Y6X6 1858 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 PLXNA3P51805 1871 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 MSI1O43347 362 aaKnown RBP17.07■□□□□ 0.32
SAMM50-201ENST00000350028 TGDSO95455 350 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 PGFP49763 221 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 PLEKHG4Q58EX7 1191 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 NAPEPLDQ6IQ20 393 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 ZNF280DQ6N043 979 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 LINC00523Q86TU6 105 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 TMEM135Q86UB9 458 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 LRRC49Q8IUZ0 686 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 UNC5BQ8IZJ1 945 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 ATPAF2Q8N5M1 289 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 PPP1R2P1Q96PQ5 205 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 SLC13A1Q9BZW2 595 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 ECT2Q9H8V3 914 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 ALG13Q9NP73 1137 aaKnown RBP17.07■□□□□ 0.32
SAMM50-201ENST00000350028 TLR6Q9Y2C9 796 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 NUP205Q92621 2012 aa17.07■□□□□ 0.32
SAMM50-201ENST00000350028 SHROOM3Q8TF72 1996 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 WASH4PA8MWX3 477 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 DFFAO00273 331 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 NBNO60934 754 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 USP1O94782 785 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 ALDH2P05091 517 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 GRK4P32298 578 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 SKIV2L2P42285 1042 aaKnown RBP17.06■□□□□ 0.32
SAMM50-201ENST00000350028 MLLT6P55198 1093 aaPredicted RBP17.06■□□□□ 0.32
SAMM50-201ENST00000350028 DDR2Q16832 855 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 GRTP1Q5TC63 336 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 FAM171A1Q5VUB5 890 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 RASSF3Q86WH2 238 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.06■□□□□ 0.32
SAMM50-201ENST00000350028 DBF4BQ8NFT6 615 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 RAB3IL1Q8TBN0 382 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 SEPT8Q92599 483 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 PTPRN2Q92932 1015 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 THOC1Q96FV9 657 aaKnown RBP17.06■□□□□ 0.32
SAMM50-201ENST00000350028 IL12RB2Q99665 862 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 TRIM55Q9BYV6 548 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 SLC39A8Q9C0K1 460 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 PCMTD2Q9NV79 361 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 ZFATQ9P243 1243 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 TXNDC16Q9P2K2 825 aa17.06■□□□□ 0.32
SAMM50-201ENST00000350028 AAR2Q9Y312 384 aaKnown RBP17.06■□□□□ 0.32
SAMM50-201ENST00000350028 FAM237BA0A1B0GVD1 139 aa17.05■□□□□ 0.32
SAMM50-201ENST00000350028 E9PAM4 449 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms