RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 PAG1Q9NWQ8 432 aa1.65□□□□□ -2.15
LINC00643-201ENST00000334389 KLHL21Q9UJP4 597 aa1.65□□□□□ -2.15
LINC00643-201ENST00000334389 NXT1Q9UKK6 140 aaKnown RBP1.65□□□□□ -2.15
LINC00643-201ENST00000334389 VAV3Q9UKW4 847 aa1.65□□□□□ -2.15
LINC00643-201ENST00000334389 KCNMB2Q9Y691 235 aa1.65□□□□□ -2.15
LINC00643-201ENST00000334389 USP3Q9Y6I4 520 aa1.65□□□□□ -2.15
LINC00643-201ENST00000334389 HERC2O95714 4834 aa1.65□□□□□ -2.15
LINC00643-201ENST00000334389 SHANK1Q9Y566 2161 aa1.65□□□□□ -2.15
LINC00643-201ENST00000334389 ZNF532Q9HCE3 1301 aa1.65□□□□□ -2.15
LINC00643-201ENST00000334389 FAM186AA6NE01 2351 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 IGLV3-12A0A075B6K2 115 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 LOC102723996A0A087X1L8 192 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 PTGESO14684 152 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 PER2O15055 1255 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 OR10H2O60403 315 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 RNF40O75150 1001 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 PPP6R2O75170 966 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 OXSR1O95747 527 aaPredicted RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 WNT1P04628 370 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 GLB1P16278 677 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ADRA2CP18825 462 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 BCKDHBP21953 392 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 IL10P22301 178 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ADORA1P30542 326 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 GBP2P32456 591 aaPredicted RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 UGT1A5P35504 534 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 DEKP35659 375 aaKnown RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 RPL21P46778 160 aaKnown RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 BLKP51451 505 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 NCKAP1LP55160 1127 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 HNRNPKP61978 463 aaKnown RBP eCLIP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 USP46P62068 366 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 GABREP78334 506 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 STK11Q15831 433 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 TTC31Q49AM3 519 aaPredicted RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 CERCAMQ5T4B2 595 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 HEATR6Q6AI08 1181 aaKnown RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 SDE2Q6IQ49 451 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 NIPAL1Q6NVV3 410 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 BRICD5Q6PL45 260 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 NXPE4Q6UWF7 544 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 PI16Q6UXB8 463 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 SND1Q7KZF4 910 aaKnown RBP eCLIP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 OTUD6AQ7L8S5 288 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 UNC93AQ86WB7 457 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 KBTBD2Q8IY47 623 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 FAM71E2Q8N5Q1 922 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ITFG1Q8TB96 612 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ESR2Q92731 530 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 LPPQ93052 612 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ZBTB10Q96DT7 871 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 DNAJA3Q96EY1 480 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 TNIP3Q96KP6 325 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ZNF560Q96MR9 790 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 TAAR1Q96RJ0 339 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 TUBGCP5Q96RT8 1024 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 TACO1Q9BSH4 297 aaKnown RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 SMG9Q9H0W8 520 aaKnown RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 POLR3FQ9H1D9 316 aaPredicted RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 OSBPL2Q9H1P3 480 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 RAD18Q9NS91 495 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 WHRNQ9P202 907 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ARHGAP28Q9P2N2 729 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ST6GALNAC2Q9UJ37 374 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ITGA11Q9UKX5 1188 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 UBQLN1Q9UMX0 589 aaKnown RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 HSPG2P98160 4391 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 TLR4O00206 839 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 PROM1O43490 865 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 TSPAN6O43657 245 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 THP07101 528 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 FBXO45P0C2W1 286 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ADH5P11766 374 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 COX6B1P14854 86 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 GDI1P31150 447 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 PRCPP42785 496 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 LIMK2P53671 638 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 CXADRP78310 365 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 MRPS11P82912 194 aaKnown RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 GOLGA8FQ08AF8 430 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 GOLGA8DPQ0D2H9 430 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 TFCP2Q12800 502 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ILF2Q12905 390 aaKnown RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 NKAPLQ5M9Q1 402 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 PPP1R26Q5T8A7 1209 aaPredicted RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 DCAF12L1Q5VU92 463 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 FAM46CQ5VWP2 391 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ATG9BQ674R7 924 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 TIGD3Q6B0B8 471 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 RIPOR1Q6ZS17 1223 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 SLC9A9Q8IVB4 645 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 SIAH3Q8IW03 269 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 MAPKAPK5Q8IW41 473 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ADGRF4Q8IZF3 695 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ZNF444Q8N0Y2 327 aaPredicted RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 LCORLQ8N3X6 602 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 RAB3IL1Q8TBN0 382 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 LRRC15Q8TF66 581 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 PGAP3Q96FM1 320 aaPredicted RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 SEC16BQ96JE7 1060 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms