RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 RELL1Q8IUW5 271 aa13.4□□□□□ -0.27
CPNE1-201ENST00000317677 THEM5Q8N1Q8 247 aa13.4□□□□□ -0.27
CPNE1-201ENST00000317677 CCDC33Q8N5R6 958 aa13.4□□□□□ -0.27
CPNE1-201ENST00000317677 NAT8LQ8N9F0 302 aa13.4□□□□□ -0.27
CPNE1-201ENST00000317677 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.4□□□□□ -0.27
CPNE1-201ENST00000317677 WDR60Q8WVS4 1066 aa13.4□□□□□ -0.27
CPNE1-201ENST00000317677 NRG4Q8WWG1 115 aa13.4□□□□□ -0.27
CPNE1-201ENST00000317677 RSAD2Q8WXG1 361 aa13.4□□□□□ -0.27
CPNE1-201ENST00000317677 EDEM1Q92611 657 aa13.4□□□□□ -0.27
CPNE1-201ENST00000317677 B3GALT6Q96L58 329 aa13.4□□□□□ -0.27
CPNE1-201ENST00000317677 C9orf72Q96LT7 481 aa13.4□□□□□ -0.27
CPNE1-201ENST00000317677 ZNF184Q99676 751 aaPredicted RBP13.4□□□□□ -0.27
CPNE1-201ENST00000317677 SEZ6LQ9BYH1 1024 aa13.4□□□□□ -0.27
CPNE1-201ENST00000317677 SMIM31A0A1B0GVY4 71 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 FAM72CH0Y354 149 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 MAP3K7O43318 606 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 BANF1O75531 89 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 ZNF189O75820 626 aaPredicted RBP13.39□□□□□ -0.27
CPNE1-201ENST00000317677 TTC4O95801 387 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 SYN1P17600 705 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 RBL1P28749 1068 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 CCL23P55773 120 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 RNASELQ05823 741 aaKnown RBP13.39□□□□□ -0.27
CPNE1-201ENST00000317677 FAAP100Q0VG06 881 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 BTG3Q14201 252 aaPredicted RBP13.39□□□□□ -0.27
CPNE1-201ENST00000317677 MORF4L2Q15014 288 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 FAM72AQ5TYM5 149 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 FAM72DQ6L9T8 149 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 DARS2Q6PI48 645 aaKnown RBP13.39□□□□□ -0.27
CPNE1-201ENST00000317677 CCDC80Q76M96 950 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 MARK2Q7KZI7 788 aaKnown RBP13.39□□□□□ -0.27
CPNE1-201ENST00000317677 FAM72BQ86X60 149 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 ALDH16A1Q8IZ83 802 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 NETO2Q8NC67 525 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 SLC7A14Q8TBB6 771 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 NAT14Q8WUY8 206 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 SEPT8Q92599 483 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 RBM15Q96T37 977 aaKnown RBP eCLIP13.39□□□□□ -0.273e-7■□□□□ 9.8
CPNE1-201ENST00000317677 WDR83Q9BRX9 315 aaKnown RBP13.39□□□□□ -0.27
CPNE1-201ENST00000317677 GPR62Q9BZJ7 368 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 KANSL3Q9P2N6 904 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 STAP1Q9ULZ2 295 aa13.39□□□□□ -0.27
CPNE1-201ENST00000317677 H7C0C1 242 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 BIRC5O15392 142 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 CXCL10P02778 98 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 NCAM1P13591 858 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 PBX3P40426 434 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 ATP5OP48047 213 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 SLC11A1P49279 550 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 TSPY1Q01534 308 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 KBTBD12Q3ZCT8 623 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 MSS51Q4VC12 460 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 SLC39A12Q504Y0 691 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 VARS2Q5ST30 1063 aaKnown RBP13.38□□□□□ -0.27
CPNE1-201ENST00000317677 ANKRD33Q7Z3H0 272 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 TMEM173Q86WV6 379 aaPredicted RBP13.38□□□□□ -0.27
CPNE1-201ENST00000317677 SCML4Q8N228 414 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 RTP4Q96DX8 246 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 PGAP3Q96FM1 320 aaPredicted RBP13.38□□□□□ -0.27
CPNE1-201ENST00000317677 TGS1Q96RS0 853 aaKnown RBP13.38□□□□□ -0.27
CPNE1-201ENST00000317677 TUBB6Q9BUF5 446 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 BRD8Q9H0E9 1235 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 ARHGEF4Q9NR80 690 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 SPATA7Q9P0W8 599 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 HAO1Q9UJM8 370 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 SHOC2Q9UQ13 582 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 CHKBQ9Y259 395 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 ATP11BQ9Y2G3 1177 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 PCDHB7Q9Y5E2 793 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 BCLAF3A2AJT9 711 aaKnown RBP13.38□□□□□ -0.27
CPNE1-201ENST00000317677 H0Y3Z8 333 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 GOLGA8MH3BSY2 632 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 HNRNPRO43390 633 aaKnown RBP13.38□□□□□ -0.27
CPNE1-201ENST00000317677 EPHB2P29323 1055 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 CYP2C18P33260 490 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 BMP8BP34820 402 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 MAGEA4P43358 317 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 GPR15P49685 360 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 SLC5A3P53794 718 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 HPCAP84074 193 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 SEMA3BQ13214 749 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 MRPL58Q14197 206 aaKnown RBP13.38□□□□□ -0.27
CPNE1-201ENST00000317677 TRIM60Q495X7 471 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 C1orf53Q5VUE5 145 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 BSPRYQ5W0U4 402 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 ARHGEF18Q6ZSZ5 1173 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 TAC4Q86UU9 113 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 PSTKQ8IV42 348 aaKnown RBP13.38□□□□□ -0.27
CPNE1-201ENST00000317677 RNF139Q8WU17 664 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 BCL7CQ8WUZ0 217 aaPredicted RBP13.38□□□□□ -0.27
CPNE1-201ENST00000317677 ARHGEF2Q92974 986 aaKnown RBP13.38□□□□□ -0.27
CPNE1-201ENST00000317677 LBHD1Q9BQE6 289 aaPredicted RBP13.38□□□□□ -0.27
CPNE1-201ENST00000317677 PRO3102Q9H379 93 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 PNPLA8Q9NP80 782 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 TBCCD1Q9NVR7 557 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 DTLQ9NZJ0 730 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 SNX10Q9Y5X0 201 aa13.38□□□□□ -0.27
CPNE1-201ENST00000317677 A0A0J9YVX5 310 aa13.37□□□□□ -0.27
CPNE1-201ENST00000317677 SMIM23A6NLE4 172 aa13.37□□□□□ -0.27
CPNE1-201ENST00000317677 CAPN9O14815 690 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms