RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TREML1Q86YW5 311 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 DQX1Q8TE96 717 aaKnown RBP20.53■□□□□ 0.88
VPS53-201ENST00000291074 USP33Q8TEY7 942 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 HDAC11Q96DB2 347 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 MFSD3Q96ES6 412 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 EBF4Q9BQW3 602 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 BTBD10Q9BSF8 475 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 GBA3Q9H227 469 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 PTPRDP23468 1912 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 BPTFQ12830 3046 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 CCDC22O60826 627 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 SRGAP2BP0DMP2 458 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 FGF3P11487 239 aaPredicted RBP20.53■□□□□ 0.88
VPS53-201ENST00000291074 PCLAFQ15004 111 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 INTS6LQ5JSJ4 861 aaKnown RBP20.53■□□□□ 0.88
VPS53-201ENST00000291074 KCTD11Q693B1 232 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.53■□□□□ 0.88
VPS53-201ENST00000291074 ACMSDQ8TDX5 336 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 ZNF778Q96MU6 729 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 SIK2Q9H0K1 926 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 LRRC40Q9H9A6 602 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 TMEM216Q9P0N5 145 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 GABRQQ9UN88 632 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 NLRC5Q86WI3 1866 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 CCDC78A2IDD5 438 aa20.52■□□□□ 0.88
VPS53-201ENST00000291074 GPR182O15218 404 aa20.52■□□□□ 0.88
VPS53-201ENST00000291074 ESRRAP11474 423 aaPredicted RBP20.52■□□□□ 0.88
VPS53-201ENST00000291074 TYK2P29597 1187 aa20.52■□□□□ 0.88
VPS53-201ENST00000291074 GP5P40197 560 aa20.52■□□□□ 0.88
VPS53-201ENST00000291074 ATG14Q6ZNE5 492 aa20.52■□□□□ 0.88
VPS53-201ENST00000291074 ARHGAP36Q6ZRI8 547 aa20.52■□□□□ 0.88
VPS53-201ENST00000291074 MRPL10Q7Z7H8 261 aaKnown RBP20.52■□□□□ 0.88
VPS53-201ENST00000291074 CASS4Q9NQ75 786 aa20.52■□□□□ 0.88
VPS53-201ENST00000291074 BFARQ9NZS9 450 aa20.52■□□□□ 0.88
VPS53-201ENST00000291074 ZCWPW2A0A1B0GU75 182 aa20.52■□□□□ 0.88
VPS53-201ENST00000291074 KPNA6O60684 536 aa20.52■□□□□ 0.88
VPS53-201ENST00000291074 F9P00740 461 aa20.52■□□□□ 0.88
VPS53-201ENST00000291074 JCHAINP01591 159 aa20.52■□□□□ 0.88
VPS53-201ENST00000291074 PGFP49763 221 aa20.52■□□□□ 0.88
VPS53-201ENST00000291074 RWDD4Q6NW29 188 aaKnown RBP20.52■□□□□ 0.88
VPS53-201ENST00000291074 FAM171BQ6P995 826 aa20.52■□□□□ 0.88
VPS53-201ENST00000291074 DCLK2Q8N568 766 aa20.52■□□□□ 0.88
VPS53-201ENST00000291074 SERBP1Q8NC51 408 aaKnown RBP eCLIP20.52■□□□□ 0.88
VPS53-201ENST00000291074 H0Y3Z8 333 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 NCAM2O15394 837 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 GYG2O15488 501 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 HNRNPCL1O60812 293 aaKnown RBP20.51■□□□□ 0.87
VPS53-201ENST00000291074 CALB2P22676 271 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 NAB1Q13506 487 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 KRT72Q14CN4 511 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 PM20D1Q6GTS8 502 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 STRA8Q7Z7C7 330 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 C10orf107Q8IVU9 208 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 RAB3IL1Q8TBN0 382 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 NUDCD1Q96RS6 583 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 RNPEPL1Q9HAU8 725 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 DMAP1Q9NPF5 467 aaPredicted RBP20.51■□□□□ 0.87
VPS53-201ENST00000291074 SNX15Q9NRS6 342 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 TAS2R1Q9NYW7 299 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 RAD54BQ9Y620 910 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 ARHGAP42A6NI28 874 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 GOLGA8TH3BQL2 631 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 GSC2O15499 205 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 ENO1P06733 434 aaKnown RBP20.51■□□□□ 0.87
VPS53-201ENST00000291074 MAP2K2P36507 400 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 ANKRD20A4Q4UJ75 823 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 HSP90AA5PQ58FG0 334 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 TEDDM1Q5T9Z0 273 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 EP400NLQ6ZTU2 488 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 OTOP3Q7RTS5 596 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 FBXO27Q8NI29 283 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 CPNE1Q99829 537 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 ACBD6Q9BR61 282 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 WWP1Q9H0M0 922 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 CAB39LQ9H9S4 337 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 ZFYVE28Q9HCC9 887 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 NMRK2Q9NPI5 230 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 CHRAC1Q9NRG0 131 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 THAP1Q9NVV9 213 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 RRN3Q9NYV6 651 aa20.51■□□□□ 0.87
VPS53-201ENST00000291074 PROCP04070 461 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 MX2P20592 715 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 ALDH18A1P54886 795 aaKnown RBP20.5■□□□□ 0.87
VPS53-201ENST00000291074 TLDC1Q6P9B6 456 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 TMEM135Q86UB9 458 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 METTL23Q86XA0 190 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 PLD6Q8N2A8 252 aaKnown RBP20.5■□□□□ 0.87
VPS53-201ENST00000291074 SMC1BQ8NDV3 1235 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 ATP2A3Q93084 1043 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 PKMYT1Q99640 499 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 RBBP8Q99708 897 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 ADAM2Q99965 735 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 DNAJC16Q9Y2G8 782 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 ARRB2P32121 409 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 SERPINB6P35237 376 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 RCN2Q14257 317 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 DLG2Q15700 870 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 ZSCAN18Q8TBC5 510 aaPredicted RBP20.5■□□□□ 0.87
VPS53-201ENST00000291074 RILPQ96NA2 401 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 DCDC2Q9UHG0 476 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms