RNA–Protein interactions for RNA: ENST00000642072.1

LINC00339-212, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-212ENST00000642072 POGKQ9P215 609 aa12.76□□□□□ -0.37
LINC00339-212ENST00000642072 TNS1Q9HBL0 1735 aaKnown RBP12.76□□□□□ -0.37
LINC00339-212ENST00000642072 RGPD1P0DJD0 1748 aa12.75□□□□□ -0.37
LINC00339-212ENST00000642072 EIF3AQ14152 1382 aaKnown RBP12.75□□□□□ -0.37
LINC00339-212ENST00000642072 GPRASP1Q5JY77 1395 aa12.75□□□□□ -0.37
LINC00339-212ENST00000642072 ATP7BP35670 1465 aa12.74□□□□□ -0.37
LINC00339-212ENST00000642072 MINK1Q8N4C8 1332 aaPredicted RBP12.74□□□□□ -0.37
LINC00339-212ENST00000642072 WASLO00401 505 aaPredicted RBP12.74□□□□□ -0.37
LINC00339-212ENST00000642072 EN1Q05925 392 aaPredicted RBP12.74□□□□□ -0.37
LINC00339-212ENST00000642072 FAM182BQ5T319 152 aa12.74□□□□□ -0.37
LINC00339-212ENST00000642072 TRAK1Q9UPV9 953 aa12.74□□□□□ -0.37
LINC00339-212ENST00000642072 A0A0G2JS52 829 aa12.73□□□□□ -0.37
LINC00339-212ENST00000642072 MYT1Q01538 1121 aa12.73□□□□□ -0.37
LINC00339-212ENST00000642072 SPATA31A1Q5TZJ5 1347 aa12.72□□□□□ -0.37
LINC00339-212ENST00000642072 KIAA0232Q92628 1395 aa12.71□□□□□ -0.37
LINC00339-212ENST00000642072 RAB3GAP2Q9H2M9 1393 aa12.71□□□□□ -0.37
LINC00339-212ENST00000642072 PRDM11Q9NQV5 511 aa12.71□□□□□ -0.37
LINC00339-212ENST00000642072 PHRF1Q9P1Y6 1649 aaKnown RBP12.7□□□□□ -0.38
LINC00339-212ENST00000642072 R3HDM1Q15032 1099 aaKnown RBP12.7□□□□□ -0.38
LINC00339-212ENST00000642072 CAMKK2Q96RR4 588 aa12.7□□□□□ -0.38
LINC00339-212ENST00000642072 ARHGEF28Q8N1W1 1705 aaKnown RBP12.7□□□□□ -0.38
LINC00339-212ENST00000642072 NGDNQ8NEJ9 315 aaKnown RBP12.69□□□□□ -0.38
LINC00339-212ENST00000642072 POLR3AO14802 1390 aaPredicted RBP12.69□□□□□ -0.38
LINC00339-212ENST00000642072 ITSN1Q15811 1721 aa12.68□□□□□ -0.38
LINC00339-212ENST00000642072 TOPAZ1Q8N9V7 1692 aa12.68□□□□□ -0.38
LINC00339-212ENST00000642072 EZH2Q15910 746 aaKnown RBP12.68□□□□□ -0.38
LINC00339-212ENST00000642072 DCAF11Q8TEB1 546 aa12.68□□□□□ -0.38
LINC00339-212ENST00000642072 PAK3O75914 559 aaPredicted RBP12.67□□□□□ -0.38
LINC00339-212ENST00000642072 CHRNA2Q15822 529 aa12.67□□□□□ -0.38
LINC00339-212ENST00000642072 NUDT16Q96DE0 195 aaKnown RBP12.67□□□□□ -0.38
LINC00339-212ENST00000642072 STAC3Q96MF2 364 aa12.67□□□□□ -0.38
LINC00339-212ENST00000642072 NRKQ7Z2Y5 1582 aa12.67□□□□□ -0.38
LINC00339-212ENST00000642072 PARD3Q8TEW0 1356 aa12.67□□□□□ -0.38
LINC00339-212ENST00000642072 SSH2Q76I76 1423 aa12.66□□□□□ -0.38
LINC00339-212ENST00000642072 FAM196AQ6ZSG2 479 aa12.66□□□□□ -0.38
LINC00339-212ENST00000642072 KDM2AQ9Y2K7 1162 aa12.66□□□□□ -0.38
LINC00339-212ENST00000642072 LMO7Q8WWI1 1683 aa12.66□□□□□ -0.38
LINC00339-212ENST00000642072 RREB1Q92766 1687 aa12.66□□□□□ -0.38
LINC00339-212ENST00000642072 CAMTA1Q9Y6Y1 1673 aa12.66□□□□□ -0.38
LINC00339-212ENST00000642072 TRIM37O94972 964 aa12.65□□□□□ -0.38
LINC00339-212ENST00000642072 BARGINQ6ZT62 677 aa12.65□□□□□ -0.38
LINC00339-212ENST00000642072 CPDO75976 1380 aa12.65□□□□□ -0.38
LINC00339-212ENST00000642072 USP19O94966 1318 aa12.64□□□□□ -0.39
LINC00339-212ENST00000642072 PLEKHG3A1L390 1219 aa12.64□□□□□ -0.39
LINC00339-212ENST00000642072 ZC3H6P61129 1189 aaKnown RBP12.64□□□□□ -0.39
LINC00339-212ENST00000642072 ACEP12821 1306 aa12.63□□□□□ -0.39
LINC00339-212ENST00000642072 NUP188Q5SRE5 1749 aa12.63□□□□□ -0.39
LINC00339-212ENST00000642072 UTRNP46939 3433 aa12.63□□□□□ -0.39
LINC00339-212ENST00000642072 NBPF8Q3BBV2 869 aa12.63□□□□□ -0.39
LINC00339-212ENST00000642072 NUTM2GQ5VZR2 741 aa12.63□□□□□ -0.39
LINC00339-212ENST00000642072 CDK19Q9BWU1 502 aa12.63□□□□□ -0.39
LINC00339-212ENST00000642072 STRN4Q9NRL3 753 aa12.63□□□□□ -0.39
LINC00339-212ENST00000642072 APBA3O96018 575 aa12.62□□□□□ -0.39
LINC00339-212ENST00000642072 LARP1Q6PKG0 1096 aaKnown RBP12.62□□□□□ -0.39
LINC00339-212ENST00000642072 CCDC61Q9Y6R9 512 aa12.62□□□□□ -0.39
LINC00339-212ENST00000642072 USP35Q9P2H5 1018 aa12.61□□□□□ -0.39
LINC00339-212ENST00000642072 TCP11L2Q8N4U5 519 aa12.6□□□□□ -0.39
LINC00339-212ENST00000642072 PEAK1Q9H792 1746 aa12.59□□□□□ -0.39
LINC00339-212ENST00000642072 PARP4Q9UKK3 1724 aaKnown RBP12.59□□□□□ -0.39
LINC00339-212ENST00000642072 KIAA1210Q9ULL0 1709 aa12.59□□□□□ -0.39
LINC00339-212ENST00000642072 COL5A2P05997 1499 aaPredicted RBP12.59□□□□□ -0.39
LINC00339-212ENST00000642072 PDE3BQ13370 1112 aa12.58□□□□□ -0.4
LINC00339-212ENST00000642072 ABTB2Q8N961 1025 aa12.58□□□□□ -0.4
LINC00339-212ENST00000642072 THRAP3Q9Y2W1 955 aaKnown RBP12.58□□□□□ -0.4
LINC00339-212ENST00000642072 GCP02774 474 aa12.57□□□□□ -0.4
LINC00339-212ENST00000642072 EVA1CP58658 441 aa12.57□□□□□ -0.4
LINC00339-212ENST00000642072 PPIP5K1Q6PFW1 1433 aa12.56□□□□□ -0.4
LINC00339-212ENST00000642072 NBPF1Q3BBV0 1214 aa12.56□□□□□ -0.4
LINC00339-212ENST00000642072 SLIT3O75094 1523 aa12.56□□□□□ -0.4
LINC00339-212ENST00000642072 RGPD3A6NKT7 1758 aaPredicted RBP12.56□□□□□ -0.4
LINC00339-212ENST00000642072 RGPD4Q7Z3J3 1758 aa12.56□□□□□ -0.4
LINC00339-212ENST00000642072 BRD4O60885 1362 aaPredicted RBP12.56□□□□□ -0.4
LINC00339-212ENST00000642072 LRRC37A3O60309 1634 aa12.55□□□□□ -0.4
LINC00339-212ENST00000642072 CRB1P82279 1406 aa12.55□□□□□ -0.4
LINC00339-212ENST00000642072 AATKQ6ZMQ8 1374 aa12.55□□□□□ -0.4
LINC00339-212ENST00000642072 OVOS2A0A0G2JMS6 1433 aa12.54□□□□□ -0.4
LINC00339-212ENST00000642072 OVOS2A0A0J9YW53 1432 aa12.54□□□□□ -0.4
LINC00339-212ENST00000642072 OVOS2Q6IE36 1432 aa12.54□□□□□ -0.4
LINC00339-212ENST00000642072 NBPF14Q5TI25 921 aa12.54□□□□□ -0.4
LINC00339-212ENST00000642072 NLRP13Q86W25 1043 aa12.54□□□□□ -0.4
LINC00339-212ENST00000642072 USP6P35125 1406 aa12.54□□□□□ -0.4
LINC00339-212ENST00000642072 COL18A1P39060 1754 aa12.53□□□□□ -0.4
LINC00339-212ENST00000642072 CASZ1Q86V15 1759 aa12.52□□□□□ -0.41
LINC00339-212ENST00000642072 C11orf95C9JLR9 678 aaPredicted RBP12.52□□□□□ -0.41
LINC00339-212ENST00000642072 PTF1AQ7RTS3 328 aa12.52□□□□□ -0.41
LINC00339-212ENST00000642072 SPON1Q9HCB6 807 aa12.52□□□□□ -0.41
LINC00339-212ENST00000642072 ANO8Q9HCE9 1232 aaPredicted RBP12.52□□□□□ -0.41
LINC00339-212ENST00000642072 CABP2Q9NPB3 220 aa12.52□□□□□ -0.41
LINC00339-212ENST00000642072 CENPJQ9HC77 1338 aaPredicted RBP12.52□□□□□ -0.41
LINC00339-212ENST00000642072 NINLQ9Y2I6 1382 aa12.52□□□□□ -0.41
LINC00339-212ENST00000642072 BCL9O00512 1426 aa12.52□□□□□ -0.41
LINC00339-212ENST00000642072 PIK3C2AO00443 1686 aa12.51□□□□□ -0.41
LINC00339-212ENST00000642072 SBF2Q86WG5 1849 aa12.51□□□□□ -0.41
LINC00339-212ENST00000642072 PLSCR1O15162 318 aa12.51□□□□□ -0.41
LINC00339-212ENST00000642072 KCNQ2O43526 872 aa12.51□□□□□ -0.41
LINC00339-212ENST00000642072 SRPK2P78362 688 aaKnown RBP12.51□□□□□ -0.41
LINC00339-212ENST00000642072 YY1P25490 414 aa12.5□□□□□ -0.41
LINC00339-212ENST00000642072 PROM2Q8N271 834 aa12.5□□□□□ -0.41
LINC00339-212ENST00000642072 CABP1Q9NZU7 370 aa12.5□□□□□ -0.41
LINC00339-212ENST00000642072 AXIN2Q9Y2T1 843 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms