RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	NBPF14	Q5TI25	921 aa		6.65	□□□□□ -1.34
CNOT1-223	ENST00000628857	MPND	Q8N594	471 aa		6.65	□□□□□ -1.34
CNOT1-223	ENST00000628857	LRRN4	Q8WUT4	740 aa		6.65	□□□□□ -1.34
CNOT1-223	ENST00000628857	GPSM3	Q9Y4H4	160 aa		6.65	□□□□□ -1.34
CNOT1-223	ENST00000628857	GDF9	O60383	454 aa		6.64	□□□□□ -1.35
CNOT1-223	ENST00000628857	PDXDC2P	Q6P474	469 aa		6.64	□□□□□ -1.35
CNOT1-223	ENST00000628857	MAP10	Q9P2G4	905 aa		6.64	□□□□□ -1.35
CNOT1-223	ENST00000628857	SH3BP2	P78314	561 aa		6.63	□□□□□ -1.35
CNOT1-223	ENST00000628857	FLII	Q13045	1269 aa		6.63	□□□□□ -1.35
CNOT1-223	ENST00000628857	ZNF511	Q8NB15	262 aa		6.63	□□□□□ -1.35
CNOT1-223	ENST00000628857	PRM3	Q9NNZ6	103 aa		6.63	□□□□□ -1.35
CNOT1-223	ENST00000628857	FKBPL	Q9UIM3	349 aa		6.63	□□□□□ -1.35
CNOT1-223	ENST00000628857	VARS	P26640	1264 aa	Known RBP	6.62	□□□□□ -1.35
CNOT1-223	ENST00000628857	SH3RF1	Q7Z6J0	888 aa		6.62	□□□□□ -1.35
CNOT1-223	ENST00000628857	BPHL	Q86WA6	291 aa	Predicted RBP	6.62	□□□□□ -1.35
CNOT1-223	ENST00000628857	BAP1	Q92560	729 aa		6.62	□□□□□ -1.35
CNOT1-223	ENST00000628857	GJD4	Q96KN9	370 aa	Predicted RBP	6.62	□□□□□ -1.35
CNOT1-223	ENST00000628857	TRIM34	Q9BYJ4	488 aa		6.62	□□□□□ -1.35
CNOT1-223	ENST00000628857	PKD2L1	Q9P0L9	805 aa		6.62	□□□□□ -1.35
CNOT1-223	ENST00000628857	SKOR1	P84550	965 aa		6.61	□□□□□ -1.35
CNOT1-223	ENST00000628857	NR6A1	Q15406	480 aa		6.61	□□□□□ -1.35
CNOT1-223	ENST00000628857	RC3H1	Q5TC82	1133 aa	Known RBP	6.61	□□□□□ -1.35
CNOT1-223	ENST00000628857	MTMR14	Q8NCE2	650 aa		6.61	□□□□□ -1.35
CNOT1-223	ENST00000628857	SIAH2	O43255	324 aa		6.6	□□□□□ -1.35
CNOT1-223	ENST00000628857	TRIM67	Q6ZTA4	783 aa		6.6	□□□□□ -1.35
CNOT1-223	ENST00000628857	SH3BP5L	Q7L8J4	393 aa		6.6	□□□□□ -1.35
CNOT1-223	ENST00000628857	IRX2	Q9BZI1	471 aa	Predicted RBP	6.6	□□□□□ -1.35
CNOT1-223	ENST00000628857	HMX1	Q9NP08	348 aa	Predicted RBP	6.6	□□□□□ -1.35
CNOT1-223	ENST00000628857	SNRK	Q9NRH2	765 aa		6.6	□□□□□ -1.35
CNOT1-223	ENST00000628857	NRG2	O14511	850 aa	Predicted RBP	6.59	□□□□□ -1.35
CNOT1-223	ENST00000628857	PTK2	Q05397	1052 aa		6.59	□□□□□ -1.35
CNOT1-223	ENST00000628857	TOR4A	Q9NXH8	423 aa		6.59	□□□□□ -1.35
CNOT1-223	ENST00000628857	PDZRN3	Q9UPQ7	1066 aa		6.59	□□□□□ -1.35
CNOT1-223	ENST00000628857	MCM6	Q14566	821 aa		6.58	□□□□□ -1.36
CNOT1-223	ENST00000628857	TRMT44	Q8IYL2	757 aa	Known RBP	6.58	□□□□□ -1.36
CNOT1-223	ENST00000628857	SNIP1	Q8TAD8	396 aa	Known RBP	6.58	□□□□□ -1.36
CNOT1-223	ENST00000628857	MRGPRX2	Q96LB1	330 aa		6.58	□□□□□ -1.36
CNOT1-223	ENST00000628857	C1QTNF2	Q9BXJ5	285 aa		6.58	□□□□□ -1.36
CNOT1-223	ENST00000628857	NDUFB9	Q9Y6M9	179 aa		6.58	□□□□□ -1.36
CNOT1-223	ENST00000628857	GFRA3	O60609	400 aa		6.57	□□□□□ -1.36
CNOT1-223	ENST00000628857	MCCD1	P59942	119 aa	Predicted RBP	6.57	□□□□□ -1.36
CNOT1-223	ENST00000628857	EHBP1	Q8NDI1	1231 aa		6.57	□□□□□ -1.36
CNOT1-223	ENST00000628857	FAM174A	Q8TBP5	190 aa		6.57	□□□□□ -1.36
CNOT1-223	ENST00000628857	EPS8L1	Q8TE68	723 aa		6.57	□□□□□ -1.36
CNOT1-223	ENST00000628857	ZNF592	Q92610	1267 aa		6.57	□□□□□ -1.36
CNOT1-223	ENST00000628857	CDK15	Q96Q40	435 aa		6.57	□□□□□ -1.36
CNOT1-223	ENST00000628857	CDV3	Q9UKY7	258 aa	Known RBP	6.57	□□□□□ -1.36
CNOT1-223	ENST00000628857	DGAT1	O75907	488 aa		6.56	□□□□□ -1.36
CNOT1-223	ENST00000628857	CYP4X1	Q8N118	509 aa		6.56	□□□□□ -1.36
CNOT1-223	ENST00000628857	MAP4K5	Q9Y4K4	846 aa		6.56	□□□□□ -1.36
CNOT1-223	ENST00000628857	FOXC1	Q12948	553 aa		6.55	□□□□□ -1.36
CNOT1-223	ENST00000628857	LINC01559	Q495D7	138 aa		6.55	□□□□□ -1.36
CNOT1-223	ENST00000628857	C4orf48	Q5BLP8	95 aa		6.55	□□□□□ -1.36
CNOT1-223	ENST00000628857	FOXJ1	Q92949	421 aa		6.55	□□□□□ -1.36
CNOT1-223	ENST00000628857	ZBBX	A8MT70	800 aa		6.54	□□□□□ -1.36
CNOT1-223	ENST00000628857	AGER	Q15109	404 aa		6.54	□□□□□ -1.36
CNOT1-223	ENST00000628857	CCDC125	Q86Z20	511 aa		6.54	□□□□□ -1.36
CNOT1-223	ENST00000628857	ARHGAP9	Q9BRR9	750 aa		6.54	□□□□□ -1.36
CNOT1-223	ENST00000628857	GPR37L1	O60883	481 aa		6.53	□□□□□ -1.36
CNOT1-223	ENST00000628857	AVP	P01185	164 aa		6.53	□□□□□ -1.36
CNOT1-223	ENST00000628857	ZBTB33	Q86T24	672 aa		6.53	□□□□□ -1.36
CNOT1-223	ENST00000628857	OCSTAMP	Q9BR26	566 aa		6.53	□□□□□ -1.36
CNOT1-223	ENST00000628857	ZNF330	Q9Y3S2	320 aa	Predicted RBP	6.53	□□□□□ -1.36
CNOT1-223	ENST00000628857	TTC24	A2A3L6	582 aa	Predicted RBP	6.52	□□□□□ -1.37
CNOT1-223	ENST00000628857	TNFRSF10A	O00220	468 aa		6.52	□□□□□ -1.37
CNOT1-223	ENST00000628857	NR1H3	Q13133	447 aa		6.52	□□□□□ -1.37
CNOT1-223	ENST00000628857	NR5A1	Q13285	461 aa		6.52	□□□□□ -1.37
CNOT1-223	ENST00000628857	WASHC4	Q2M389	1173 aa		6.52	□□□□□ -1.37
CNOT1-223	ENST00000628857	ERFE	Q4G0M1	354 aa		6.52	□□□□□ -1.37
CNOT1-223	ENST00000628857	SMCP	P49901	116 aa	Predicted RBP	6.51	□□□□□ -1.37
CNOT1-223	ENST00000628857	CTC1	Q2NKJ3	1217 aa		6.51	□□□□□ -1.37
CNOT1-223	ENST00000628857	CRIPAK	Q8N1N5	446 aa		6.51	□□□□□ -1.37
CNOT1-223	ENST00000628857	ADAM32	Q8TC27	787 aa		6.51	□□□□□ -1.37
CNOT1-223	ENST00000628857	RAD21	O60216	631 aa		6.5	□□□□□ -1.37
CNOT1-223	ENST00000628857	ADH1C	P00326	375 aa		6.5	□□□□□ -1.37
CNOT1-223	ENST00000628857	SMPD1	P17405	629 aa		6.5	□□□□□ -1.37
CNOT1-223	ENST00000628857	GRM5	P41594	1212 aa		6.5	□□□□□ -1.37
CNOT1-223	ENST00000628857	WWC1	Q8IX03	1113 aa		6.5	□□□□□ -1.37
CNOT1-223	ENST00000628857	SEPT12	Q8IYM1	358 aa		6.5	□□□□□ -1.37
CNOT1-223	ENST00000628857	TRIM52	Q96A61	297 aa		6.5	□□□□□ -1.37
CNOT1-223	ENST00000628857	TBC1D2B	Q9UPU7	963 aa		6.5	□□□□□ -1.37
CNOT1-223	ENST00000628857	COG6	Q9Y2V7	657 aa		6.5	□□□□□ -1.37
CNOT1-223	ENST00000628857	MAGEB6P1	A0A0J9YX57	407 aa		6.49	□□□□□ -1.37
CNOT1-223	ENST00000628857	ALDH1A1	P00352	501 aa		6.49	□□□□□ -1.37
CNOT1-223	ENST00000628857	FBXO45	P0C2W1	286 aa		6.49	□□□□□ -1.37
CNOT1-223	ENST00000628857	UBTF	P17480	764 aa	Known RBP	6.49	□□□□□ -1.37
CNOT1-223	ENST00000628857	SOX11	P35716	441 aa		6.49	□□□□□ -1.37
CNOT1-223	ENST00000628857	IRF5	Q13568	498 aa		6.49	□□□□□ -1.37
CNOT1-223	ENST00000628857	PKDCC	Q504Y2	493 aa		6.49	□□□□□ -1.37
CNOT1-223	ENST00000628857		A6NJR5	290 aa		6.48	□□□□□ -1.37
CNOT1-223	ENST00000628857		J3QL48	77 aa		6.48	□□□□□ -1.37
CNOT1-223	ENST00000628857	NBPF20	Q3BBV1	942 aa		6.48	□□□□□ -1.37
CNOT1-223	ENST00000628857	SLC10A4	Q96EP9	437 aa		6.48	□□□□□ -1.37
CNOT1-223	ENST00000628857	GDPD2	Q9HCC8	539 aa		6.48	□□□□□ -1.37
CNOT1-223	ENST00000628857	GTF3C3	Q9Y5Q9	886 aa		6.48	□□□□□ -1.37
CNOT1-223	ENST00000628857	WASF2	Q9Y6W5	498 aa		6.48	□□□□□ -1.37
CNOT1-223	ENST00000628857	EIF4G2	P78344	907 aa	Known RBP eCLIP	6.47	□□□□□ -1.37
CNOT1-223	ENST00000628857	DHX9	Q08211	1270 aa	Known RBP	6.47	□□□□□ -1.37
CNOT1-223	ENST00000628857	VASH1	Q7L8A9	365 aa	Predicted RBP	6.47	□□□□□ -1.37
CNOT1-223	ENST00000628857	DZIP3	Q86Y13	1208 aa	Known RBP	6.47	□□□□□ -1.37

Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms