RNA–Protein interactions for RNA: ENST00000612404.4

SREK1-216, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, humanhuman

TSL 1 (best) BASIC

Gene SREK1, Length 2,128 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREK1-216ENST00000612404 NME9Q86XW9 330 aa23.75■■□□□ 1.39
SREK1-216ENST00000612404 CCDC184Q52MB2 194 aa23.75■■□□□ 1.39
SREK1-216ENST00000612404 MRS2Q9HD23 443 aa23.75■■□□□ 1.39
SREK1-216ENST00000612404 NRKQ7Z2Y5 1582 aa23.75■■□□□ 1.39
SREK1-216ENST00000612404 FOXO3O43524 673 aa23.74■■□□□ 1.39
SREK1-216ENST00000612404 PSME1Q06323 249 aa23.74■■□□□ 1.39
SREK1-216ENST00000612404 NLRP13Q86W25 1043 aa23.73■■□□□ 1.39
SREK1-216ENST00000612404 PPP2R1AP30153 589 aa23.72■■□□□ 1.39
SREK1-216ENST00000612404 KIF1AQ12756 1690 aa23.72■■□□□ 1.39
SREK1-216ENST00000612404 SLAIN2Q9P270 581 aa23.72■■□□□ 1.39
SREK1-216ENST00000612404 ANKRD26Q9UPS8 1709 aa23.71■■□□□ 1.39
SREK1-216ENST00000612404 SSH2Q76I76 1423 aa23.71■■□□□ 1.39
SREK1-216ENST00000612404 PAK3O75914 559 aaPredicted RBP23.71■■□□□ 1.39
SREK1-216ENST00000612404 ZRANB1Q9UGI0 708 aa23.71■■□□□ 1.39
SREK1-216ENST00000612404 TTC21AQ8NDW8 1320 aa23.7■■□□□ 1.38
SREK1-216ENST00000612404 BRD4O60885 1362 aaPredicted RBP23.69■■□□□ 1.38
SREK1-216ENST00000612404 XPCQ01831 940 aaPredicted RBP23.69■■□□□ 1.38
SREK1-216ENST00000612404 COG3Q96JB2 828 aa23.69■■□□□ 1.38
SREK1-216ENST00000612404 BRINP3Q76B58 766 aa23.66■■□□□ 1.38
SREK1-216ENST00000612404 KRT28Q7Z3Y7 464 aa23.65■■□□□ 1.38
SREK1-216ENST00000612404 DDX17Q92841 729 aaKnown RBP23.65■■□□□ 1.38
SREK1-216ENST00000612404 ABTB2Q8N961 1025 aa23.64■■□□□ 1.37
SREK1-216ENST00000612404 NUTM2GQ5VZR2 741 aa23.63■■□□□ 1.37
SREK1-216ENST00000612404 YTHDC1Q96MU7 727 aaKnown RBP23.63■■□□□ 1.37
SREK1-216ENST00000612404 PIK3C2AO00443 1686 aa23.63■■□□□ 1.37
SREK1-216ENST00000612404 NPHP3Q7Z494 1330 aa23.63■■□□□ 1.37
SREK1-216ENST00000612404 NLRP6P59044 892 aa23.62■■□□□ 1.37
SREK1-216ENST00000612404 FAM9BQ8IZU0 186 aa23.61■■□□□ 1.37
SREK1-216ENST00000612404 OVOS2A0A0J9YW53 1432 aa23.6■■□□□ 1.37
SREK1-216ENST00000612404 OVOS2Q6IE36 1432 aa23.6■■□□□ 1.37
SREK1-216ENST00000612404 FBLN1P23142 703 aa23.59■■□□□ 1.37
SREK1-216ENST00000612404 MTHFSP49914 203 aa23.59■■□□□ 1.37
SREK1-216ENST00000612404 LMOD2Q6P5Q4 547 aa23.59■■□□□ 1.37
SREK1-216ENST00000612404 SCAF1Q9H7N4 1312 aaKnown RBP23.59■■□□□ 1.37
SREK1-216ENST00000612404 USP31Q70CQ4 1352 aa23.58■■□□□ 1.37
SREK1-216ENST00000612404 TRPM3Q9HCF6 1732 aaPredicted RBP23.58■■□□□ 1.36
SREK1-216ENST00000612404 SOX12O15370 315 aa23.57■■□□□ 1.36
SREK1-216ENST00000612404 PNISRQ8TF01 805 aaKnown RBP23.56■■□□□ 1.36
SREK1-216ENST00000612404 PPM1GO15355 546 aaPredicted RBP23.54■■□□□ 1.36
SREK1-216ENST00000612404 PXDNQ92626 1479 aa23.54■■□□□ 1.36
SREK1-216ENST00000612404 CFAP53Q96M91 514 aa23.54■■□□□ 1.36
SREK1-216ENST00000612404 MAP2P11137 1827 aaKnown RBP23.54■■□□□ 1.36
SREK1-216ENST00000612404 AATKQ6ZMQ8 1374 aa23.53■■□□□ 1.36
SREK1-216ENST00000612404 POLKQ9UBT6 870 aa23.53■■□□□ 1.36
SREK1-216ENST00000612404 PLEKHG5O94827 1062 aa23.53■■□□□ 1.36
SREK1-216ENST00000612404 RRS1Q15050 365 aaKnown RBP23.53■■□□□ 1.36
SREK1-216ENST00000612404 SBNO1A3KN83 1393 aa23.52■■□□□ 1.36
SREK1-216ENST00000612404 TOM1O60784 492 aa23.51■■□□□ 1.35
SREK1-216ENST00000612404 EMILIN1Q9Y6C2 1016 aa23.51■■□□□ 1.35
SREK1-216ENST00000612404 MARF1Q9Y4F3 1742 aaKnown RBP23.51■■□□□ 1.35
SREK1-216ENST00000612404 USP54Q70EL1 1684 aa23.51■■□□□ 1.35
SREK1-216ENST00000612404 ROBO1Q9Y6N7 1651 aa23.51■■□□□ 1.35
SREK1-216ENST00000612404 ALS2Q96Q42 1657 aa23.49■■□□□ 1.35
SREK1-216ENST00000612404 TNS3Q68CZ2 1445 aa23.49■■□□□ 1.35
SREK1-216ENST00000612404 WDR43Q15061 677 aaKnown RBP eCLIP23.49■■□□□ 1.35
SREK1-216ENST00000612404 SOS2Q07890 1332 aaPredicted RBP23.49■■□□□ 1.35
SREK1-216ENST00000612404 SPATA31A3Q5VYP0 1347 aa23.48■■□□□ 1.35
SREK1-216ENST00000612404 UBAP1LF5GYI3 381 aa23.48■■□□□ 1.35
SREK1-216ENST00000612404 NHSL1Q5SYE7 1610 aa23.48■■□□□ 1.35
SREK1-216ENST00000612404 PIP4K2BP78356 416 aa23.47■■□□□ 1.35
SREK1-216ENST00000612404 CERKQ8TCT0 537 aa23.47■■□□□ 1.35
SREK1-216ENST00000612404 SMG6Q86US8 1419 aaKnown RBP23.45■■□□□ 1.35
SREK1-216ENST00000612404 IQSEC2Q5JU85 1478 aa23.45■■□□□ 1.35
SREK1-216ENST00000612404 KCNH5Q8NCM2 988 aa23.45■■□□□ 1.34
SREK1-216ENST00000612404 ARHGEF10O15013 1369 aa23.45■■□□□ 1.34
SREK1-216ENST00000612404 MAP3K19Q56UN5 1328 aa23.44■■□□□ 1.34
SREK1-216ENST00000612404 ADAMTS8Q9UP79 889 aa23.44■■□□□ 1.34
SREK1-216ENST00000612404 PNPLA6Q8IY17 1366 aa23.43■■□□□ 1.34
SREK1-216ENST00000612404 USP19O94966 1318 aa23.43■■□□□ 1.34
SREK1-216ENST00000612404 CDK12Q9NYV4 1490 aaPredicted RBP23.43■■□□□ 1.34
SREK1-216ENST00000612404 GCP02774 474 aa23.42■■□□□ 1.34
SREK1-216ENST00000612404 COL3A1P02461 1466 aaPredicted RBP23.42■■□□□ 1.34
SREK1-216ENST00000612404 DIAPH1O60610 1272 aaKnown RBP23.41■■□□□ 1.34
SREK1-216ENST00000612404 AMPHP49418 695 aa23.41■■□□□ 1.34
SREK1-216ENST00000612404 SHPRHQ149N8 1683 aa23.41■■□□□ 1.34
SREK1-216ENST00000612404 SLIT3O75094 1523 aa23.41■■□□□ 1.34
SREK1-216ENST00000612404 HNRNPUQ00839 825 aaKnown RBP eCLIP23.41■■□□□ 1.34
SREK1-216ENST00000612404 NUDCQ9Y266 331 aa23.41■■□□□ 1.34
SREK1-216ENST00000612404 NFAT5O94916 1531 aa23.4■■□□□ 1.34
SREK1-216ENST00000612404 INSRP06213 1382 aa23.4■■□□□ 1.34
SREK1-216ENST00000612404 ZBTB7CA1YPR0 619 aa23.4■■□□□ 1.34
SREK1-216ENST00000612404 CABLES1Q8TDN4 633 aa23.39■■□□□ 1.34
SREK1-216ENST00000612404 PEAK1Q9H792 1746 aa23.39■■□□□ 1.34
SREK1-216ENST00000612404 AHDC1Q5TGY3 1603 aaPredicted RBP23.39■■□□□ 1.34
SREK1-216ENST00000612404 MED1Q15648 1581 aaPredicted RBP23.39■■□□□ 1.34
SREK1-216ENST00000612404 U2SURPO15042 1029 aaKnown RBP23.39■■□□□ 1.33
SREK1-216ENST00000612404 FLT4P35916 1363 aa23.37■■□□□ 1.33
SREK1-216ENST00000612404 HSP90AB2PQ58FF8 381 aa23.37■■□□□ 1.33
SREK1-216ENST00000612404 LTN1O94822 1766 aa23.37■■□□□ 1.33
SREK1-216ENST00000612404 U2AF1L5P0DN76 240 aaPredicted RBP23.36■■□□□ 1.33
SREK1-216ENST00000612404 U2AF1Q01081 240 aaKnown RBP eCLIP23.36■■□□□ 1.331e-9■■□□□ 14.2
SREK1-216ENST00000612404 LRRC59Q96AG4 307 aaKnown RBP23.36■■□□□ 1.33
SREK1-216ENST00000612404 PHRF1Q9P1Y6 1649 aaKnown RBP23.35■■□□□ 1.33
SREK1-216ENST00000612404 PHLPP1O60346 1717 aa23.34■■□□□ 1.33
SREK1-216ENST00000612404 SENP3-EIF4A1A0A087X0R7 540 aa23.34■■□□□ 1.33
SREK1-216ENST00000612404 HOXC9P31274 260 aa23.34■■□□□ 1.33
SREK1-216ENST00000612404 ZC3H6P61129 1189 aaKnown RBP23.34■■□□□ 1.33
SREK1-216ENST00000612404 KIF24Q5T7B8 1368 aa23.34■■□□□ 1.33
SREK1-216ENST00000612404 IL13P35225 146 aa23.33■■□□□ 1.33
SREK1-216ENST00000612404 HAP1P54257 671 aaPredicted RBP23.33■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms