RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 ZBTB7CA1YPR0 619 aa7.6□□□□□ -1.19
VRK3-226ENST00000602029 PRDM11Q9NQV5 511 aa7.6□□□□□ -1.19
VRK3-226ENST00000602029 STRN4Q9NRL3 753 aa7.6□□□□□ -1.19
VRK3-226ENST00000602029 USP35Q9P2H5 1018 aa7.6□□□□□ -1.19
VRK3-226ENST00000602029 TECPR2O15040 1411 aa7.6□□□□□ -1.19
VRK3-226ENST00000602029 PIK3C2GO75747 1445 aa7.6□□□□□ -1.19
VRK3-226ENST00000602029 PRAG1Q86YV5 1406 aa7.6□□□□□ -1.19
VRK3-226ENST00000602029 ONECUT3O60422 494 aaPredicted RBP7.59□□□□□ -1.19
VRK3-226ENST00000602029 NUTM2GQ5VZR2 741 aa7.59□□□□□ -1.19
VRK3-226ENST00000602029 MYOM1P52179 1685 aa7.59□□□□□ -1.19
VRK3-226ENST00000602029 DISP2A7MBM2 1401 aa7.59□□□□□ -1.19
VRK3-226ENST00000602029 NRKQ7Z2Y5 1582 aa7.59□□□□□ -1.2
VRK3-226ENST00000602029 EIF3AQ14152 1382 aaKnown RBP7.59□□□□□ -1.2
VRK3-226ENST00000602029 FMN2Q9NZ56 1722 aa7.58□□□□□ -1.2
VRK3-226ENST00000602029 FAM83GA6ND36 823 aa7.58□□□□□ -1.2
VRK3-226ENST00000602029 EVA1CP58658 441 aa7.58□□□□□ -1.2
VRK3-226ENST00000602029 C14orf93Q9H972 538 aaKnown RBP7.58□□□□□ -1.2
VRK3-226ENST00000602029 SPATA31E1Q6ZUB1 1445 aa7.58□□□□□ -1.2
VRK3-226ENST00000602029 RGPD8O14715 1765 aaPredicted RBP7.58□□□□□ -1.2
VRK3-226ENST00000602029 CASZ1Q86V15 1759 aa7.58□□□□□ -1.2
VRK3-226ENST00000602029 SBNO1A3KN83 1393 aa7.58□□□□□ -1.2
VRK3-226ENST00000602029 CHRNA2Q15822 529 aa7.57□□□□□ -1.2
VRK3-226ENST00000602029 DCAF11Q8TEB1 546 aa7.57□□□□□ -1.2
VRK3-226ENST00000602029 CAMKK2Q96RR4 588 aa7.57□□□□□ -1.2
VRK3-226ENST00000602029 NINLQ9Y2I6 1382 aa7.57□□□□□ -1.2
VRK3-226ENST00000602029 THSD7AQ9UPZ6 1657 aa7.57□□□□□ -1.2
VRK3-226ENST00000602029 NRXN1Q9ULB1 1477 aa7.56□□□□□ -1.2
VRK3-226ENST00000602029 DCAF8L1A6NGE4 600 aa7.56□□□□□ -1.2
VRK3-226ENST00000602029 ZC3H6P61129 1189 aaKnown RBP7.56□□□□□ -1.2
VRK3-226ENST00000602029 PDE3BQ13370 1112 aa7.56□□□□□ -1.2
VRK3-226ENST00000602029 SIRT1Q96EB6 747 aa7.56□□□□□ -1.2
VRK3-226ENST00000602029 PPP1R1BQ9UD71 204 aaPredicted RBP7.56□□□□□ -1.2
VRK3-226ENST00000602029 KNDC1Q76NI1 1749 aa7.55□□□□□ -1.2
VRK3-226ENST00000602029 IFT172Q9UG01 1749 aa7.55□□□□□ -1.2
VRK3-226ENST00000602029 ACIN1Q9UKV3 1341 aaKnown RBP7.55□□□□□ -1.2
VRK3-226ENST00000602029 ANKARQ7Z5J8 1434 aa7.55□□□□□ -1.2
VRK3-226ENST00000602029 TRIM37O94972 964 aa7.55□□□□□ -1.2
VRK3-226ENST00000602029 APBA3O96018 575 aa7.55□□□□□ -1.2
VRK3-226ENST00000602029 WASLO00401 505 aaPredicted RBP7.54□□□□□ -1.2
VRK3-226ENST00000602029 SHANK3Q9BYB0 1731 aa7.54□□□□□ -1.2
VRK3-226ENST00000602029 GOLGB1Q14789 3259 aaKnown RBP7.54□□□□□ -1.2
VRK3-226ENST00000602029 ADGRB2O60241 1585 aa7.54□□□□□ -1.2
VRK3-226ENST00000602029 KCNQ2O43526 872 aa7.53□□□□□ -1.2
VRK3-226ENST00000602029 NBPF8Q3BBV2 869 aa7.53□□□□□ -1.2
VRK3-226ENST00000602029 NBPF14Q5TI25 921 aa7.53□□□□□ -1.2
VRK3-226ENST00000602029 FAM196AQ6ZSG2 479 aa7.53□□□□□ -1.2
VRK3-226ENST00000602029 KIAA0232Q92628 1395 aa7.53□□□□□ -1.2
VRK3-226ENST00000602029 SPATA31A5Q5VU36 1347 aa7.52□□□□□ -1.2
VRK3-226ENST00000602029 SPATA31A7Q8IWB4 1347 aa7.52□□□□□ -1.2
VRK3-226ENST00000602029 RAB3GAP2Q9H2M9 1393 aa7.52□□□□□ -1.21
VRK3-226ENST00000602029 SRPK2P78362 688 aaKnown RBP7.52□□□□□ -1.21
VRK3-226ENST00000602029 ABTB2Q8N961 1025 aa7.52□□□□□ -1.21
VRK3-226ENST00000602029 NUDT16Q96DE0 195 aaKnown RBP7.52□□□□□ -1.21
VRK3-226ENST00000602029 SPON1Q9HCB6 807 aa7.52□□□□□ -1.21
VRK3-226ENST00000602029 TULP4Q9NRJ4 1543 aa7.52□□□□□ -1.21
VRK3-226ENST00000602029 PRR36Q9H6K5 1346 aa7.52□□□□□ -1.21
VRK3-226ENST00000602029 COL14A1Q05707 1796 aaKnown RBP7.51□□□□□ -1.21
VRK3-226ENST00000602029 SBF2Q86WG5 1849 aa7.51□□□□□ -1.21
VRK3-226ENST00000602029 CDK19Q9BWU1 502 aa7.51□□□□□ -1.21
VRK3-226ENST00000602029 PDGFDQ9GZP0 370 aaPredicted RBP7.51□□□□□ -1.21
VRK3-226ENST00000602029 DLC1Q96QB1 1528 aa7.51□□□□□ -1.21
VRK3-226ENST00000602029 SPATA31A1Q5TZJ5 1347 aa7.51□□□□□ -1.21
VRK3-226ENST00000602029 SOX12O15370 315 aa7.5□□□□□ -1.21
VRK3-226ENST00000602029 ACEP12821 1306 aa7.5□□□□□ -1.21
VRK3-226ENST00000602029 CSB-PGBD3P0DP91 1061 aa7.49□□□□□ -1.21
VRK3-226ENST00000602029 LARP1Q6PKG0 1096 aaKnown RBP7.49□□□□□ -1.21
VRK3-226ENST00000602029 TCP11L2Q8N4U5 519 aa7.49□□□□□ -1.21
VRK3-226ENST00000602029 CRYBG1Q9Y4K1 1723 aa7.49□□□□□ -1.21
VRK3-226ENST00000602029 GIGYF1O75420 1035 aaPredicted RBP7.48□□□□□ -1.21
VRK3-226ENST00000602029 TRIM26Q12899 539 aaPredicted RBP7.48□□□□□ -1.21
VRK3-226ENST00000602029 TOM1L2Q6ZVM7 507 aa7.48□□□□□ -1.21
VRK3-226ENST00000602029 NLRP13Q86W25 1043 aa7.48□□□□□ -1.21
VRK3-226ENST00000602029 ATP7BP35670 1465 aa7.48□□□□□ -1.21
VRK3-226ENST00000602029 PARD3Q8TEW0 1356 aa7.47□□□□□ -1.21
VRK3-226ENST00000602029 SSH2Q76I76 1423 aa7.47□□□□□ -1.21
VRK3-226ENST00000602029 BCL11BQ9C0K0 894 aaPredicted RBP7.47□□□□□ -1.21
VRK3-226ENST00000602029 ANO8Q9HCE9 1232 aaPredicted RBP7.47□□□□□ -1.21
VRK3-226ENST00000602029 CABP2Q9NPB3 220 aa7.47□□□□□ -1.21
VRK3-226ENST00000602029 CCDC61Q9Y6R9 512 aa7.47□□□□□ -1.21
VRK3-226ENST00000602029 TRPM3Q9HCF6 1732 aaPredicted RBP7.47□□□□□ -1.21
VRK3-226ENST00000602029 ADGRB1O14514 1584 aa7.46□□□□□ -1.21
VRK3-226ENST00000602029 RGPD3A6NKT7 1758 aaPredicted RBP7.46□□□□□ -1.21
VRK3-226ENST00000602029 RGPD4Q7Z3J3 1758 aa7.46□□□□□ -1.21
VRK3-226ENST00000602029 PTGER2P43116 358 aa7.46□□□□□ -1.22
VRK3-226ENST00000602029 NLRP6P59044 892 aa7.46□□□□□ -1.22
VRK3-226ENST00000602029 STAC3Q96MF2 364 aa7.46□□□□□ -1.22
VRK3-226ENST00000602029 SYT17Q9BSW7 474 aa7.46□□□□□ -1.22
VRK3-226ENST00000602029 PPIP5K1Q6PFW1 1433 aa7.45□□□□□ -1.22
VRK3-226ENST00000602029 ALS2Q96Q42 1657 aa7.45□□□□□ -1.22
VRK3-226ENST00000602029 ZBTB7AO95365 584 aa7.45□□□□□ -1.22
VRK3-226ENST00000602029 GCP02774 474 aa7.45□□□□□ -1.22
VRK3-226ENST00000602029 DDB1Q16531 1140 aa7.45□□□□□ -1.22
VRK3-226ENST00000602029 BARGINQ6ZT62 677 aa7.45□□□□□ -1.22
VRK3-226ENST00000602029 FHDC1Q9C0D6 1143 aaPredicted RBP7.45□□□□□ -1.22
VRK3-226ENST00000602029 CENPJQ9HC77 1338 aaPredicted RBP7.45□□□□□ -1.22
VRK3-226ENST00000602029 ITSN1Q15811 1721 aa7.44□□□□□ -1.22
VRK3-226ENST00000602029 C11orf95C9JLR9 678 aaPredicted RBP7.44□□□□□ -1.22
VRK3-226ENST00000602029 CAPN15O75808 1086 aa7.44□□□□□ -1.22
VRK3-226ENST00000602029 KLHL34Q8N239 644 aa7.44□□□□□ -1.22
VRK3-226ENST00000602029 THRAP3Q9Y2W1 955 aaKnown RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms