RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 ACEP12821 1306 aa17.44■□□□□ 0.38
LIG1-217ENST00000599165 NRAPQ86VF7 1730 aa17.44■□□□□ 0.38
LIG1-217ENST00000599165 TONSLQ96HA7 1378 aa17.43■□□□□ 0.38
LIG1-217ENST00000599165 PPIP5K1Q6PFW1 1433 aa17.43■□□□□ 0.38
LIG1-217ENST00000599165 PLEKHG5O94827 1062 aa17.42■□□□□ 0.38
LIG1-217ENST00000599165 LMOD2Q6P5Q4 547 aa17.42■□□□□ 0.38
LIG1-217ENST00000599165 TRPC5Q9UL62 973 aaPredicted RBP17.42■□□□□ 0.38
LIG1-217ENST00000599165 SRPK2P78362 688 aaKnown RBP17.4■□□□□ 0.38
LIG1-217ENST00000599165 AKAP12Q02952 1782 aa17.39■□□□□ 0.37
LIG1-217ENST00000599165 COL14A1Q05707 1796 aaKnown RBP17.39■□□□□ 0.37
LIG1-217ENST00000599165 FAM83GA6ND36 823 aa17.39■□□□□ 0.37
LIG1-217ENST00000599165 UNC5CLQ8IV45 518 aa17.39■□□□□ 0.37
LIG1-217ENST00000599165 SBNO2Q9Y2G9 1366 aa17.39■□□□□ 0.37
LIG1-217ENST00000599165 SSH2Q76I76 1423 aa17.38■□□□□ 0.37
LIG1-217ENST00000599165 NRKQ7Z2Y5 1582 aa17.38■□□□□ 0.37
LIG1-217ENST00000599165 PAK3O75914 559 aaPredicted RBP17.37■□□□□ 0.37
LIG1-217ENST00000599165 UPF1Q92900 1129 aaKnown RBP eCLIP17.37■□□□□ 0.37
LIG1-217ENST00000599165 BRWD3Q6RI45 1802 aa17.36■□□□□ 0.37
LIG1-217ENST00000599165 GJD4Q96KN9 370 aaPredicted RBP17.36■□□□□ 0.37
LIG1-217ENST00000599165 CARD11Q9BXL7 1154 aa17.36■□□□□ 0.37
LIG1-217ENST00000599165 CABP1Q9NZU7 370 aa17.36■□□□□ 0.37
LIG1-217ENST00000599165 EVC2Q86UK5 1308 aa17.36■□□□□ 0.37
LIG1-217ENST00000599165 USP6P35125 1406 aa17.36■□□□□ 0.37
LIG1-217ENST00000599165 HAP1P54257 671 aaPredicted RBP17.35■□□□□ 0.37
LIG1-217ENST00000599165 PIK3C2AO00443 1686 aa17.35■□□□□ 0.37
LIG1-217ENST00000599165 USP19O94966 1318 aa17.34■□□□□ 0.37
LIG1-217ENST00000599165 NUTM2GQ5VZR2 741 aa17.34■□□□□ 0.37
LIG1-217ENST00000599165 MON2Q7Z3U7 1717 aa17.33■□□□□ 0.36
LIG1-217ENST00000599165 CPSF1Q10570 1443 aaKnown RBP17.32■□□□□ 0.36
LIG1-217ENST00000599165 VPS72Q15906 364 aa17.32■□□□□ 0.36
LIG1-217ENST00000599165 PCGF6Q9BYE7 350 aa17.32■□□□□ 0.36
LIG1-217ENST00000599165 LMO7Q8WWI1 1683 aa17.32■□□□□ 0.36
LIG1-217ENST00000599165 CD163L1Q9NR16 1453 aa17.31■□□□□ 0.36
LIG1-217ENST00000599165 KIAA0232Q92628 1395 aa17.31■□□□□ 0.36
LIG1-217ENST00000599165 SLIT3O75094 1523 aa17.31■□□□□ 0.36
LIG1-217ENST00000599165 BRD4O60885 1362 aaPredicted RBP17.3■□□□□ 0.36
LIG1-217ENST00000599165 TESK2Q96S53 571 aa17.3■□□□□ 0.36
LIG1-217ENST00000599165 BTG4Q9NY30 223 aa17.3■□□□□ 0.36
LIG1-217ENST00000599165 EP400Q96L91 3159 aa17.3■□□□□ 0.36
LIG1-217ENST00000599165 ABTB2Q8N961 1025 aa17.29■□□□□ 0.36
LIG1-217ENST00000599165 ATAD2Q6PL18 1390 aa17.28■□□□□ 0.36
LIG1-217ENST00000599165 ONECUT3O60422 494 aaPredicted RBP17.28■□□□□ 0.36
LIG1-217ENST00000599165 CAMTA1Q9Y6Y1 1673 aa17.28■□□□□ 0.36
LIG1-217ENST00000599165 ZC3H6P61129 1189 aaKnown RBP17.27■□□□□ 0.36
LIG1-217ENST00000599165 CHRNA2Q15822 529 aa17.27■□□□□ 0.36
LIG1-217ENST00000599165 PRDM11Q9NQV5 511 aa17.27■□□□□ 0.36
LIG1-217ENST00000599165 COL18A1P39060 1754 aa17.27■□□□□ 0.35
LIG1-217ENST00000599165 CPDO75976 1380 aa17.27■□□□□ 0.35
LIG1-217ENST00000599165 THSD7AQ9UPZ6 1657 aa17.26■□□□□ 0.35
LIG1-217ENST00000599165 USP54Q70EL1 1684 aa17.26■□□□□ 0.35
LIG1-217ENST00000599165 CLSPNQ9HAW4 1339 aa17.25■□□□□ 0.35
LIG1-217ENST00000599165 ST20-MTHFSA0A0A6YYL1 179 aa17.25■□□□□ 0.35
LIG1-217ENST00000599165 SPATA31A5Q5VU36 1347 aa17.24■□□□□ 0.35
LIG1-217ENST00000599165 TTC21BQ7Z4L5 1316 aa17.24■□□□□ 0.35
LIG1-217ENST00000599165 SPATA31A7Q8IWB4 1347 aa17.24■□□□□ 0.35
LIG1-217ENST00000599165 GCP02774 474 aa17.24■□□□□ 0.35
LIG1-217ENST00000599165 NLRP13Q86W25 1043 aa17.23■□□□□ 0.35
LIG1-217ENST00000599165 SEPT12Q8IYM1 358 aa17.23■□□□□ 0.35
LIG1-217ENST00000599165 ZNF692Q9BU19 519 aaPredicted RBP17.22■□□□□ 0.35
LIG1-217ENST00000599165 USP47Q96K76 1375 aa17.22■□□□□ 0.35
LIG1-217ENST00000599165 NFAT5O94916 1531 aa17.21■□□□□ 0.35
LIG1-217ENST00000599165 KTN1Q86UP2 1357 aaKnown RBP17.21■□□□□ 0.35
LIG1-217ENST00000599165 NLRP6P59044 892 aa17.21■□□□□ 0.35
LIG1-217ENST00000599165 SLC12A5Q9H2X9 1139 aa17.21■□□□□ 0.35
LIG1-217ENST00000599165 CCDC9Q9Y3X0 531 aaKnown RBP17.21■□□□□ 0.35
LIG1-217ENST00000599165 RGPD5Q99666 1765 aa17.2■□□□□ 0.34
LIG1-217ENST00000599165 FAM98CQ17RN3 349 aaKnown RBP17.2■□□□□ 0.34
LIG1-217ENST00000599165 PUS7Q96PZ0 661 aaKnown RBP17.2■□□□□ 0.34
LIG1-217ENST00000599165 TIMELESSQ9UNS1 1208 aa17.2■□□□□ 0.34
LIG1-217ENST00000599165 SPATA31A1Q5TZJ5 1347 aa17.2■□□□□ 0.34
LIG1-217ENST00000599165 COL5A2P05997 1499 aaPredicted RBP17.19■□□□□ 0.34
LIG1-217ENST00000599165 A0A1W2PP64 1363 aa17.19■□□□□ 0.34
LIG1-217ENST00000599165 ZRANB1Q9UGI0 708 aa17.19■□□□□ 0.34
LIG1-217ENST00000599165 TTC21AQ8NDW8 1320 aa17.19■□□□□ 0.34
LIG1-217ENST00000599165 USP31Q70CQ4 1352 aa17.17■□□□□ 0.34
LIG1-217ENST00000599165 STRN4Q9NRL3 753 aa17.17■□□□□ 0.34
LIG1-217ENST00000599165 AATKQ6ZMQ8 1374 aa17.16■□□□□ 0.34
LIG1-217ENST00000599165 LARP1Q6PKG0 1096 aaKnown RBP17.16■□□□□ 0.34
LIG1-217ENST00000599165 MYOM1P52179 1685 aa17.16■□□□□ 0.34
LIG1-217ENST00000599165 EDC4Q6P2E9 1401 aaKnown RBP17.15■□□□□ 0.34
LIG1-217ENST00000599165 NME9Q86XW9 330 aa17.15■□□□□ 0.34
LIG1-217ENST00000599165 TMC1Q8TDI8 760 aa17.15■□□□□ 0.34
LIG1-217ENST00000599165 AXIN2Q9Y2T1 843 aa17.15■□□□□ 0.34
LIG1-217ENST00000599165 OVOS2A0A0J9YW53 1432 aa17.14■□□□□ 0.33
LIG1-217ENST00000599165 OVOS2Q6IE36 1432 aa17.14■□□□□ 0.33
LIG1-217ENST00000599165 KRT27Q7Z3Y8 459 aa17.14■□□□□ 0.33
LIG1-217ENST00000599165 ARHGEF25Q86VW2 580 aa17.14■□□□□ 0.33
LIG1-217ENST00000599165 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.14■□□□□ 0.33
LIG1-217ENST00000599165 LTN1O94822 1766 aa17.14■□□□□ 0.33
LIG1-217ENST00000599165 WNK3Q9BYP7 1800 aa17.14■□□□□ 0.33
LIG1-217ENST00000599165 NINLQ9Y2I6 1382 aa17.13■□□□□ 0.33
LIG1-217ENST00000599165 PARP4Q9UKK3 1724 aaKnown RBP17.13■□□□□ 0.33
LIG1-217ENST00000599165 BLMP54132 1417 aaPredicted RBP17.13■□□□□ 0.33
LIG1-217ENST00000599165 TNS1Q9HBL0 1735 aaKnown RBP17.11■□□□□ 0.33
LIG1-217ENST00000599165 FAM182BQ5T319 152 aa17.11■□□□□ 0.33
LIG1-217ENST00000599165 BARGINQ6ZT62 677 aa17.11■□□□□ 0.33
LIG1-217ENST00000599165 CCER1Q8TC90 406 aaPredicted RBP17.11■□□□□ 0.33
LIG1-217ENST00000599165 CRB1P82279 1406 aa17.11■□□□□ 0.33
LIG1-217ENST00000599165 ABCC6O95255 1503 aa17.11■□□□□ 0.33
LIG1-217ENST00000599165 SOX12O15370 315 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms