RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, humanhuman

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-216ENST00000592790 LRRIQ1Q96JM4 1722 aa4.34□□□□□ -1.71
VMP1-216ENST00000592790 A2MP01023 1474 aa4.34□□□□□ -1.71
VMP1-216ENST00000592790 HDAC1Q13547 482 aaPredicted RBP4.34□□□□□ -1.71
VMP1-216ENST00000592790 DENND4BO75064 1496 aaPredicted RBP4.34□□□□□ -1.72
VMP1-216ENST00000592790 TRPM1Q7Z4N2 1603 aa4.34□□□□□ -1.72
VMP1-216ENST00000592790 K7ELQ4 463 aaPredicted RBP4.34□□□□□ -1.72
VMP1-216ENST00000592790 MCM5P33992 734 aa4.34□□□□□ -1.72
VMP1-216ENST00000592790 C20orf194Q5TEA3 1177 aa4.34□□□□□ -1.72
VMP1-216ENST00000592790 SNX21Q969T3 373 aa4.34□□□□□ -1.72
VMP1-216ENST00000592790 RNF216Q9NWF9 866 aaPredicted RBP4.34□□□□□ -1.72
VMP1-216ENST00000592790 TRAK1Q9UPV9 953 aa4.34□□□□□ -1.72
VMP1-216ENST00000592790 ATP10AO60312 1499 aa4.33□□□□□ -1.72
VMP1-216ENST00000592790 BCORL1Q5H9F3 1711 aa4.33□□□□□ -1.72
VMP1-216ENST00000592790 HMGN5P82970 282 aaKnown RBP4.33□□□□□ -1.72
VMP1-216ENST00000592790 KIAA1211Q6ZU35 1233 aa4.33□□□□□ -1.72
VMP1-216ENST00000592790 CHMP4CQ96CF2 233 aa4.33□□□□□ -1.72
VMP1-216ENST00000592790 RRP7AQ9Y3A4 280 aaKnown RBP4.33□□□□□ -1.72
VMP1-216ENST00000592790 PPRC1Q5VV67 1664 aaKnown RBP4.33□□□□□ -1.72
VMP1-216ENST00000592790 RIMBP3CA6NJZ7 1639 aa4.33□□□□□ -1.72
VMP1-216ENST00000592790 RIMBP3BA6NNM3 1639 aa4.33□□□□□ -1.72
VMP1-216ENST00000592790 RIMBP3Q9UFD9 1639 aa4.33□□□□□ -1.72
VMP1-216ENST00000592790 NSD3Q9BZ95 1437 aa4.33□□□□□ -1.72
VMP1-216ENST00000592790 MTHFSP49914 203 aa4.33□□□□□ -1.72
VMP1-216ENST00000592790 RIPK4P57078 832 aa4.33□□□□□ -1.72
VMP1-216ENST00000592790 ZRSR1Q15695 479 aaKnown RBP4.33□□□□□ -1.72
VMP1-216ENST00000592790 RTF1Q92541 710 aaKnown RBP4.33□□□□□ -1.72
VMP1-216ENST00000592790 SYCP2Q9BX26 1530 aa4.33□□□□□ -1.72
VMP1-216ENST00000592790 ABCC10Q5T3U5 1492 aa4.33□□□□□ -1.72
VMP1-216ENST00000592790 GOLGA6L4A6NEF3 574 aa4.33□□□□□ -1.72
VMP1-216ENST00000592790 HS1BP3Q53T59 392 aa4.33□□□□□ -1.72
VMP1-216ENST00000592790 TBC1D2Q9BYX2 928 aa4.33□□□□□ -1.72
VMP1-216ENST00000592790 ZSCAN30Q86W11 494 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 STK31Q9BXU1 1019 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 PLEKHH1Q9ULM0 1364 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 PLXNC1O60486 1568 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 PLCH2O75038 1416 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 UNC13BO14795 1591 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 TTC37Q6PGP7 1564 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 SBNO2Q9Y2G9 1366 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 CHD1LQ86WJ1 897 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 BCL2L13Q9BXK5 485 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 PREX2Q70Z35 1606 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 ABCA8O94911 1581 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 ANKRD36BQ8N2N9 1353 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 BMP2KLQ5H9B9 411 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 FAM184AQ8NB25 1140 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 GPATCH3Q96I76 525 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 DMRT2Q9Y5R5 561 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 IQGAP3Q86VI3 1631 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 ZNF608Q9ULD9 1512 aaPredicted RBP4.32□□□□□ -1.72
VMP1-216ENST00000592790 CFAP70Q5T0N1 1121 aa4.32□□□□□ -1.72
VMP1-216ENST00000592790 FCHSD2O94868 740 aa4.31□□□□□ -1.72
VMP1-216ENST00000592790 TERF1P54274 439 aa4.31□□□□□ -1.72
VMP1-216ENST00000592790 EXOSC9Q06265 439 aaKnown RBP4.31□□□□□ -1.72
VMP1-216ENST00000592790 TRMT2AQ8IZ69 625 aaKnown RBP4.31□□□□□ -1.72
VMP1-216ENST00000592790 ARHGAP45Q92619 1136 aa4.31□□□□□ -1.72
VMP1-216ENST00000592790 PDCL3Q9H2J4 239 aa4.31□□□□□ -1.72
VMP1-216ENST00000592790 GGT6Q6P531 493 aa4.31□□□□□ -1.72
VMP1-216ENST00000592790 BBXQ8WY36 941 aaPredicted RBP4.31□□□□□ -1.72
VMP1-216ENST00000592790 LNPKQ9C0E8 428 aa4.31□□□□□ -1.72
VMP1-216ENST00000592790 MYO5CQ9NQX4 1742 aa4.31□□□□□ -1.72
VMP1-216ENST00000592790 DIAPH3Q9NSV4 1193 aa4.31□□□□□ -1.72
VMP1-216ENST00000592790 E9PCH4 1651 aa4.31□□□□□ -1.72
VMP1-216ENST00000592790 CDC42BPAQ5VT25 1732 aa4.31□□□□□ -1.72
VMP1-216ENST00000592790 ADGRL1O94910 1474 aa4.31□□□□□ -1.72
VMP1-216ENST00000592790 ZNF521Q96K83 1311 aa4.31□□□□□ -1.72
VMP1-216ENST00000592790 IGHDP01880 384 aa4.3□□□□□ -1.72
VMP1-216ENST00000592790 RPAP2Q8IXW5 612 aaPredicted RBP4.3□□□□□ -1.72
VMP1-216ENST00000592790 SMC5Q8IY18 1101 aa4.3□□□□□ -1.72
VMP1-216ENST00000592790 RUFY2Q8WXA3 655 aa4.3□□□□□ -1.72
VMP1-216ENST00000592790 KIF3AQ9Y496 699 aa4.3□□□□□ -1.72
VMP1-216ENST00000592790 DHX8Q14562 1220 aaKnown RBP4.3□□□□□ -1.72
VMP1-216ENST00000592790 KLHL40Q2TBA0 621 aa4.3□□□□□ -1.72
VMP1-216ENST00000592790 SLC52A1Q9NWF4 448 aa4.3□□□□□ -1.72
VMP1-216ENST00000592790 NOB1Q9ULX3 412 aaKnown RBP4.3□□□□□ -1.72
VMP1-216ENST00000592790 TRPM2O94759 1503 aa4.3□□□□□ -1.72
VMP1-216ENST00000592790 TMPOP42166 694 aaKnown RBP4.3□□□□□ -1.72
VMP1-216ENST00000592790 HSP90AB4PQ58FF6 505 aa4.3□□□□□ -1.72
VMP1-216ENST00000592790 MCTP1Q6DN14 999 aa4.3□□□□□ -1.72
VMP1-216ENST00000592790 COG3Q96JB2 828 aa4.3□□□□□ -1.72
VMP1-216ENST00000592790 SRCIN1Q9C0H9 1055 aa4.3□□□□□ -1.72
VMP1-216ENST00000592790 MYOM2P54296 1465 aa4.3□□□□□ -1.72
VMP1-216ENST00000592790 KCNJ4P48050 445 aa4.3□□□□□ -1.72
VMP1-216ENST00000592790 BRD2P25440 801 aaKnown RBP4.29□□□□□ -1.72
VMP1-216ENST00000592790 NUCB1Q02818 461 aa4.29□□□□□ -1.72
VMP1-216ENST00000592790 OS9Q13438 667 aaPredicted RBP4.29□□□□□ -1.72
VMP1-216ENST00000592790 TSPY26PQ9H489 355 aa4.29□□□□□ -1.72
VMP1-216ENST00000592790 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.29□□□□□ -1.72
VMP1-216ENST00000592790 ZFYVE9O95405 1425 aa4.29□□□□□ -1.72
VMP1-216ENST00000592790 ERC2O15083 957 aa4.29□□□□□ -1.72
VMP1-216ENST00000592790 RBM25P49756 843 aaKnown RBP4.29□□□□□ -1.72
VMP1-216ENST00000592790 TPM4P67936 248 aa4.29□□□□□ -1.72
VMP1-216ENST00000592790 DHX37Q8IY37 1157 aaKnown RBP4.29□□□□□ -1.72
VMP1-216ENST00000592790 DRC7Q8IY82 874 aa4.29□□□□□ -1.72
VMP1-216ENST00000592790 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.29□□□□□ -1.72
VMP1-216ENST00000592790 IFT57Q9NWB7 429 aa4.29□□□□□ -1.72
VMP1-216ENST00000592790 SAMD9LQ8IVG5 1584 aa4.29□□□□□ -1.72
VMP1-216ENST00000592790 GNAI3P08754 354 aa4.29□□□□□ -1.72
VMP1-216ENST00000592790 XRCC6P12956 609 aaKnown RBP eCLIP4.29□□□□□ -1.728e-25■■■□□ 15.3
VMP1-216ENST00000592790 PLCD3Q8N3E9 789 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms