RNA–Protein interactions for RNA: ENST00000584755.1

UBBP4-202, Transcript of ubiquitin B pseudogene 4, humanhuman

TSL 1 (best) BASIC

Gene UBBP4, Length 1,459 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP4-202ENST00000584755 TTC21AQ8NDW8 1320 aa18.79■□□□□ 0.6
UBBP4-202ENST00000584755 HNRNPUQ00839 825 aaKnown RBP eCLIP18.78■□□□□ 0.6
UBBP4-202ENST00000584755 NME9Q86XW9 330 aa18.78■□□□□ 0.6
UBBP4-202ENST00000584755 NGDNQ8NEJ9 315 aaKnown RBP18.78■□□□□ 0.6
UBBP4-202ENST00000584755 PHF8Q9UPP1 1060 aa18.78■□□□□ 0.6
UBBP4-202ENST00000584755 LRRC7Q96NW7 1537 aa18.78■□□□□ 0.6
UBBP4-202ENST00000584755 OVOS2A0A0J9YW53 1432 aa18.77■□□□□ 0.6
UBBP4-202ENST00000584755 BLMP54132 1417 aaPredicted RBP18.77■□□□□ 0.6
UBBP4-202ENST00000584755 OVOS2Q6IE36 1432 aa18.77■□□□□ 0.6
UBBP4-202ENST00000584755 TNNT2P45379 298 aaPredicted RBP18.77■□□□□ 0.59
UBBP4-202ENST00000584755 AATKQ6ZMQ8 1374 aa18.76■□□□□ 0.59
UBBP4-202ENST00000584755 C1orf167Q5SNV9 1468 aa18.76■□□□□ 0.59
UBBP4-202ENST00000584755 SHPRHQ149N8 1683 aa18.76■□□□□ 0.59
UBBP4-202ENST00000584755 USP54Q70EL1 1684 aa18.76■□□□□ 0.59
UBBP4-202ENST00000584755 MTHFSP49914 203 aa18.76■□□□□ 0.59
UBBP4-202ENST00000584755 MST1RQ04912 1400 aa18.76■□□□□ 0.59
UBBP4-202ENST00000584755 KIF1AQ12756 1690 aa18.75■□□□□ 0.59
UBBP4-202ENST00000584755 ZNF335Q9H4Z2 1342 aaPredicted RBP18.75■□□□□ 0.59
UBBP4-202ENST00000584755 USP31Q70CQ4 1352 aa18.75■□□□□ 0.59
UBBP4-202ENST00000584755 SMG6Q86US8 1419 aaKnown RBP18.75■□□□□ 0.59
UBBP4-202ENST00000584755 COG3Q96JB2 828 aa18.74■□□□□ 0.59
UBBP4-202ENST00000584755 ZBED9Q6R2W3 1325 aa18.74■□□□□ 0.59
UBBP4-202ENST00000584755 COL3A1P02461 1466 aaPredicted RBP18.74■□□□□ 0.59
UBBP4-202ENST00000584755 PIK3C2AO00443 1686 aa18.73■□□□□ 0.59
UBBP4-202ENST00000584755 PNPLA6Q8IY17 1366 aa18.73■□□□□ 0.59
UBBP4-202ENST00000584755 ZRANB1Q9UGI0 708 aa18.73■□□□□ 0.59
UBBP4-202ENST00000584755 MSH6P52701 1360 aa18.72■□□□□ 0.59
UBBP4-202ENST00000584755 ESCO1Q5FWF5 840 aa18.72■□□□□ 0.59
UBBP4-202ENST00000584755 ATF3P18847 181 aa18.71■□□□□ 0.59
UBBP4-202ENST00000584755 CADPS2Q86UW7 1296 aa18.71■□□□□ 0.59
UBBP4-202ENST00000584755 CFAP53Q96M91 514 aa18.71■□□□□ 0.59
UBBP4-202ENST00000584755 ADAMTS8Q9UP79 889 aa18.71■□□□□ 0.59
UBBP4-202ENST00000584755 WDR43Q15061 677 aaKnown RBP eCLIP18.71■□□□□ 0.59
UBBP4-202ENST00000584755 ORAI2Q96SN7 254 aa18.7■□□□□ 0.58
UBBP4-202ENST00000584755 POLKQ9UBT6 870 aa18.7■□□□□ 0.58
UBBP4-202ENST00000584755 MAP2P11137 1827 aaKnown RBP18.7■□□□□ 0.58
UBBP4-202ENST00000584755 MARF1Q9Y4F3 1742 aaKnown RBP18.69■□□□□ 0.58
UBBP4-202ENST00000584755 CDK12Q9NYV4 1490 aaPredicted RBP18.68■□□□□ 0.58
UBBP4-202ENST00000584755 TRPM3Q9HCF6 1732 aaPredicted RBP18.66■□□□□ 0.58
UBBP4-202ENST00000584755 PSME1Q06323 249 aa18.65■□□□□ 0.58
UBBP4-202ENST00000584755 FBLN1P23142 703 aa18.64■□□□□ 0.57
UBBP4-202ENST00000584755 FOXO3O43524 673 aa18.63■□□□□ 0.57
UBBP4-202ENST00000584755 EMILIN1Q9Y6C2 1016 aa18.63■□□□□ 0.57
UBBP4-202ENST00000584755 LTBP4Q8N2S1 1624 aa18.62■□□□□ 0.57
UBBP4-202ENST00000584755 NLRP6P59044 892 aa18.61■□□□□ 0.57
UBBP4-202ENST00000584755 ABTB2Q8N961 1025 aa18.61■□□□□ 0.57
UBBP4-202ENST00000584755 DIAPH1O60610 1272 aaKnown RBP18.6■□□□□ 0.57
UBBP4-202ENST00000584755 NUDCQ9Y266 331 aa18.6■□□□□ 0.57
UBBP4-202ENST00000584755 PEAK1Q9H792 1746 aa18.6■□□□□ 0.57
UBBP4-202ENST00000584755 ALS2Q96Q42 1657 aa18.59■□□□□ 0.57
UBBP4-202ENST00000584755 PAK3O75914 559 aaPredicted RBP18.59■□□□□ 0.57
UBBP4-202ENST00000584755 RRS1Q15050 365 aaKnown RBP18.59■□□□□ 0.57
UBBP4-202ENST00000584755 AEBP2Q6ZN18 517 aaPredicted RBP18.59■□□□□ 0.57
UBBP4-202ENST00000584755 KRT28Q7Z3Y7 464 aa18.59■□□□□ 0.57
UBBP4-202ENST00000584755 KIF24Q5T7B8 1368 aa18.59■□□□□ 0.57
UBBP4-202ENST00000584755 SLIT3O75094 1523 aa18.58■□□□□ 0.57
UBBP4-202ENST00000584755 SBNO1A3KN83 1393 aa18.58■□□□□ 0.56
UBBP4-202ENST00000584755 PXDNQ92626 1479 aa18.58■□□□□ 0.56
UBBP4-202ENST00000584755 NPHP3Q7Z494 1330 aa18.57■□□□□ 0.56
UBBP4-202ENST00000584755 NFAT5O94916 1531 aa18.57■□□□□ 0.56
UBBP4-202ENST00000584755 IQSEC2Q5JU85 1478 aa18.57■□□□□ 0.56
UBBP4-202ENST00000584755 IL13P35225 146 aa18.57■□□□□ 0.56
UBBP4-202ENST00000584755 BRINP3Q76B58 766 aa18.57■□□□□ 0.56
UBBP4-202ENST00000584755 NGEFQ8N5V2 710 aa18.57■□□□□ 0.56
UBBP4-202ENST00000584755 SLAIN2Q9P270 581 aa18.57■□□□□ 0.56
UBBP4-202ENST00000584755 RUNDC1Q96C34 613 aa18.56■□□□□ 0.56
UBBP4-202ENST00000584755 MAP3K19Q56UN5 1328 aa18.56■□□□□ 0.56
UBBP4-202ENST00000584755 PPM1GO15355 546 aaPredicted RBP18.55■□□□□ 0.56
UBBP4-202ENST00000584755 U2AF1L5P0DN76 240 aaPredicted RBP18.55■□□□□ 0.56
UBBP4-202ENST00000584755 U2AF1Q01081 240 aaKnown RBP eCLIP18.55■□□□□ 0.56
UBBP4-202ENST00000584755 NCBP3Q53F19 620 aaKnown RBP18.55■□□□□ 0.56
UBBP4-202ENST00000584755 CCDC146Q8IYE0 955 aa18.55■□□□□ 0.56
UBBP4-202ENST00000584755 USP19O94966 1318 aa18.55■□□□□ 0.56
UBBP4-202ENST00000584755 PHRF1Q9P1Y6 1649 aaKnown RBP18.54■□□□□ 0.56
UBBP4-202ENST00000584755 XPCQ01831 940 aaPredicted RBP18.54■□□□□ 0.56
UBBP4-202ENST00000584755 PDE3BQ13370 1112 aa18.54■□□□□ 0.56
UBBP4-202ENST00000584755 ZNF521Q96K83 1311 aa18.54■□□□□ 0.56
UBBP4-202ENST00000584755 FLT4P35916 1363 aa18.54■□□□□ 0.56
UBBP4-202ENST00000584755 NUTM2GQ5VZR2 741 aa18.53■□□□□ 0.56
UBBP4-202ENST00000584755 APAF1O14727 1248 aa18.52■□□□□ 0.56
UBBP4-202ENST00000584755 U2SURPO15042 1029 aaKnown RBP18.52■□□□□ 0.56
UBBP4-202ENST00000584755 KCNH5Q8NCM2 988 aa18.52■□□□□ 0.56
UBBP4-202ENST00000584755 PLEKHF1Q96S99 279 aa18.52■□□□□ 0.56
UBBP4-202ENST00000584755 RTL1A6NKG5 1358 aa18.52■□□□□ 0.56
UBBP4-202ENST00000584755 TNS3Q68CZ2 1445 aa18.52■□□□□ 0.56
UBBP4-202ENST00000584755 RGPD1P0DJD0 1748 aa18.52■□□□□ 0.55
UBBP4-202ENST00000584755 SENP3-EIF4A1A0A087X0R7 540 aa18.51■□□□□ 0.55
UBBP4-202ENST00000584755 FCHSD2O94868 740 aa18.51■□□□□ 0.55
UBBP4-202ENST00000584755 NHSL1Q5SYE7 1610 aa18.5■□□□□ 0.55
UBBP4-202ENST00000584755 SOS2Q07890 1332 aaPredicted RBP18.5■□□□□ 0.55
UBBP4-202ENST00000584755 EIF4A2Q14240 407 aaKnown RBP18.5■□□□□ 0.55
UBBP4-202ENST00000584755 HSP90AB2PQ58FF8 381 aa18.5■□□□□ 0.55
UBBP4-202ENST00000584755 DDX17Q92841 729 aaKnown RBP18.5■□□□□ 0.55
UBBP4-202ENST00000584755 PNNQ9H307 717 aaKnown RBP18.5■□□□□ 0.55
UBBP4-202ENST00000584755 LTN1O94822 1766 aa18.5■□□□□ 0.55
UBBP4-202ENST00000584755 MED1Q15648 1581 aaPredicted RBP18.49■□□□□ 0.55
UBBP4-202ENST00000584755 SPATA31A3Q5VYP0 1347 aa18.49■□□□□ 0.55
UBBP4-202ENST00000584755 SOX12O15370 315 aa18.49■□□□□ 0.55
UBBP4-202ENST00000584755 PHF23Q9BUL5 403 aaPredicted RBP18.49■□□□□ 0.55
UBBP4-202ENST00000584755 RSPH6AQ9H0K4 717 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms