RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 PSMG3-AS1Q96PY0 264 aa9.95□□□□□ -0.82
SMCHD1-209ENST00000583441 KLF16Q9BXK1 252 aaPredicted RBP9.95□□□□□ -0.82
SMCHD1-209ENST00000583441 ARHGEF15O94989 841 aa9.94□□□□□ -0.82
SMCHD1-209ENST00000583441 HOXA2O43364 376 aa9.93□□□□□ -0.82
SMCHD1-209ENST00000583441 ZIC2O95409 532 aaPredicted RBP9.93□□□□□ -0.82
SMCHD1-209ENST00000583441 CCNYL3P0C7X3 344 aa9.93□□□□□ -0.82
SMCHD1-209ENST00000583441 RBM26Q5T8P6 1007 aaKnown RBP9.93□□□□□ -0.82
SMCHD1-209ENST00000583441 WHAMMQ8TF30 809 aa9.93□□□□□ -0.82
SMCHD1-209ENST00000583441 UNC93B1Q9H1C4 597 aa9.93□□□□□ -0.82
SMCHD1-209ENST00000583441 RETREG3Q86VR2 466 aa9.92□□□□□ -0.82
SMCHD1-209ENST00000583441 ZFAND3Q9H8U3 227 aa9.92□□□□□ -0.82
SMCHD1-209ENST00000583441 MS4A1P11836 297 aa9.91□□□□□ -0.82
SMCHD1-209ENST00000583441 GUCA2AQ02747 115 aa9.91□□□□□ -0.82
SMCHD1-209ENST00000583441 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.9□□□□□ -0.82
SMCHD1-209ENST00000583441 ZNF511Q8NB15 262 aa9.9□□□□□ -0.82
SMCHD1-209ENST00000583441 DNMT3LQ9UJW3 386 aa9.9□□□□□ -0.82
SMCHD1-209ENST00000583441 SOS2Q07890 1332 aaPredicted RBP9.89□□□□□ -0.83
SMCHD1-209ENST00000583441 ITPKCQ96DU7 683 aa9.89□□□□□ -0.83
SMCHD1-209ENST00000583441 SLURP2P0DP57 97 aa9.88□□□□□ -0.83
SMCHD1-209ENST00000583441 RNFT1Q5M7Z0 435 aa9.88□□□□□ -0.83
SMCHD1-209ENST00000583441 LINC00528Q8N1L1 170 aa9.88□□□□□ -0.83
SMCHD1-209ENST00000583441 FAM174AQ8TBP5 190 aa9.88□□□□□ -0.83
SMCHD1-209ENST00000583441 KRTAP9-2Q9BYQ4 174 aa9.88□□□□□ -0.83
SMCHD1-209ENST00000583441 EVA1BQ9NVM1 165 aa9.88□□□□□ -0.83
SMCHD1-209ENST00000583441 ARID5BQ14865 1188 aa9.87□□□□□ -0.83
SMCHD1-209ENST00000583441 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.87□□□□□ -0.83
SMCHD1-209ENST00000583441 PLA2G4EQ3MJ16 856 aa9.87□□□□□ -0.83
SMCHD1-209ENST00000583441 NANOS1Q8WY41 292 aaKnown RBP9.87□□□□□ -0.83
SMCHD1-209ENST00000583441 GPR37O15354 613 aa9.86□□□□□ -0.83
SMCHD1-209ENST00000583441 SPOCK3Q9BQ16 436 aa9.86□□□□□ -0.83
SMCHD1-209ENST00000583441 PTSQ03393 145 aa9.85□□□□□ -0.83
SMCHD1-209ENST00000583441 KCNH2Q12809 1159 aa9.85□□□□□ -0.83
SMCHD1-209ENST00000583441 PTPRNQ16849 979 aa9.85□□□□□ -0.83
SMCHD1-209ENST00000583441 SMYD5Q6GMV2 418 aa9.85□□□□□ -0.83
SMCHD1-209ENST00000583441 KRTAP9-6A0A140TA67 174 aa9.84□□□□□ -0.83
SMCHD1-209ENST00000583441 GALNT6Q8NCL4 622 aa9.84□□□□□ -0.83
SMCHD1-209ENST00000583441 MAP3K10Q02779 954 aa9.83□□□□□ -0.84
SMCHD1-209ENST00000583441 NR5A1Q13285 461 aa9.83□□□□□ -0.84
SMCHD1-209ENST00000583441 Q8N3U1 123 aa9.83□□□□□ -0.84
SMCHD1-209ENST00000583441 CDK15Q96Q40 435 aa9.83□□□□□ -0.84
SMCHD1-209ENST00000583441 C6orf229H3BNL8 230 aa9.82□□□□□ -0.84
SMCHD1-209ENST00000583441 SPTLC1O15269 473 aa9.82□□□□□ -0.84
SMCHD1-209ENST00000583441 AMER1Q5JTC6 1135 aaPredicted RBP9.82□□□□□ -0.84
SMCHD1-209ENST00000583441 MEIOBQ8N635 442 aa9.82□□□□□ -0.84
SMCHD1-209ENST00000583441 K7ELQ4 463 aaPredicted RBP9.81□□□□□ -0.84
SMCHD1-209ENST00000583441 P3H3Q8IVL6 736 aa9.81□□□□□ -0.84
SMCHD1-209ENST00000583441 TTLL8A6PVC2 850 aa9.8□□□□□ -0.84
SMCHD1-209ENST00000583441 CCDC155Q8N6L0 562 aa9.8□□□□□ -0.84
SMCHD1-209ENST00000583441 DCAF5Q96JK2 942 aa9.8□□□□□ -0.84
SMCHD1-209ENST00000583441 CDC14CA4D256 554 aa9.79□□□□□ -0.84
SMCHD1-209ENST00000583441 PHF20L1A8MW92 1017 aa9.79□□□□□ -0.84
SMCHD1-209ENST00000583441 NR3C2P08235 984 aa9.79□□□□□ -0.84
SMCHD1-209ENST00000583441 SV2AQ7L0J3 742 aa9.79□□□□□ -0.84
SMCHD1-209ENST00000583441 VWA5B2Q8N398 1253 aa9.79□□□□□ -0.84
SMCHD1-209ENST00000583441 TSEN34Q9BSV6 310 aaKnown RBP9.79□□□□□ -0.84
SMCHD1-209ENST00000583441 NUTM1Q86Y26 1132 aa9.78□□□□□ -0.84
SMCHD1-209ENST00000583441 ENAMQ9NRM1 1142 aa9.78□□□□□ -0.84
SMCHD1-209ENST00000583441 FIGNL2A6NMB9 653 aa9.77□□□□□ -0.85
SMCHD1-209ENST00000583441 LYPD4Q6UWN0 246 aa9.77□□□□□ -0.85
SMCHD1-209ENST00000583441 KRTAP1-3Q8IUG1 177 aa9.77□□□□□ -0.85
SMCHD1-209ENST00000583441 ADAMTS2O95450 1211 aa9.76□□□□□ -0.85
SMCHD1-209ENST00000583441 FDX1P10109 184 aa9.76□□□□□ -0.85
SMCHD1-209ENST00000583441 TESPA1A2RU30 521 aaPredicted RBP9.75□□□□□ -0.85
SMCHD1-209ENST00000583441 PROCP04070 461 aa9.75□□□□□ -0.85
SMCHD1-209ENST00000583441 MDM2Q00987 491 aaPredicted RBP9.75□□□□□ -0.85
SMCHD1-209ENST00000583441 ITGA6P23229 1130 aa9.74□□□□□ -0.85
SMCHD1-209ENST00000583441 ITGB2P05107 769 aa9.73□□□□□ -0.85
SMCHD1-209ENST00000583441 CTHP32929 405 aa9.73□□□□□ -0.85
SMCHD1-209ENST00000583441 GRM5P41594 1212 aa9.73□□□□□ -0.85
SMCHD1-209ENST00000583441 FOXJ1Q92949 421 aa9.73□□□□□ -0.85
SMCHD1-209ENST00000583441 SLC35F4A4IF30 521 aa9.72□□□□□ -0.85
SMCHD1-209ENST00000583441 CELA2BP08218 269 aaPredicted RBP9.72□□□□□ -0.85
SMCHD1-209ENST00000583441 BEND7Q8N7W2 519 aaPredicted RBP9.72□□□□□ -0.85
SMCHD1-209ENST00000583441 PCDHGC3Q9UN70 934 aa9.72□□□□□ -0.85
SMCHD1-209ENST00000583441 CNTNAP5Q8WYK1 1306 aa9.72□□□□□ -0.85
SMCHD1-209ENST00000583441 AGERQ15109 404 aa9.71□□□□□ -0.86
SMCHD1-209ENST00000583441 SRSF11Q05519 484 aaKnown RBP9.7□□□□□ -0.86
SMCHD1-209ENST00000583441 PODNQ7Z5L7 613 aa9.7□□□□□ -0.86
SMCHD1-209ENST00000583441 PRR7Q8TB68 274 aa9.7□□□□□ -0.86
SMCHD1-209ENST00000583441 GPIHBP1Q8IV16 184 aa9.69□□□□□ -0.86
SMCHD1-209ENST00000583441 TSHZ2Q9NRE2 1034 aa9.69□□□□□ -0.86
SMCHD1-209ENST00000583441 RTN4Q9NQC3 1192 aaKnown RBP9.68□□□□□ -0.86
SMCHD1-209ENST00000583441 DESI1Q6ICB0 168 aa9.67□□□□□ -0.86
SMCHD1-209ENST00000583441 SH3RF1Q7Z6J0 888 aa9.67□□□□□ -0.86
SMCHD1-209ENST00000583441 EMILIN1Q9Y6C2 1016 aa9.67□□□□□ -0.86
SMCHD1-209ENST00000583441 BAG6P46379 1132 aa9.66□□□□□ -0.86
SMCHD1-209ENST00000583441 FSHRP23945 695 aa9.65□□□□□ -0.86
SMCHD1-209ENST00000583441 NEDD1Q8NHV4 660 aa9.65□□□□□ -0.86
SMCHD1-209ENST00000583441 MAP2K5Q13163 448 aa9.64□□□□□ -0.87
SMCHD1-209ENST00000583441 BPHLQ86WA6 291 aaPredicted RBP9.64□□□□□ -0.87
SMCHD1-209ENST00000583441 SPDYE5A6NIY4 337 aa9.62□□□□□ -0.87
SMCHD1-209ENST00000583441 SPINT1O43278 529 aa9.62□□□□□ -0.87
SMCHD1-209ENST00000583441 FURINP09958 794 aa9.62□□□□□ -0.87
SMCHD1-209ENST00000583441 C4orf48Q5BLP8 95 aa9.62□□□□□ -0.87
SMCHD1-209ENST00000583441 GPCPD1Q9NPB8 672 aa9.62□□□□□ -0.87
SMCHD1-209ENST00000583441 FAM217BQ9NTX9 383 aaPredicted RBP9.62□□□□□ -0.87
SMCHD1-209ENST00000583441 MTMR2Q13614 643 aa9.61□□□□□ -0.87
SMCHD1-209ENST00000583441 VASH1Q7L8A9 365 aaPredicted RBP9.61□□□□□ -0.87
SMCHD1-209ENST00000583441 CCDC116Q8IYX3 515 aa9.61□□□□□ -0.87
SMCHD1-209ENST00000583441 IRF6O14896 467 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms