RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 HIRIP3Q9BW71 556 aaPredicted RBP18.94■□□□□ 0.62
SS18-219ENST00000581570 PRDM11Q9NQV5 511 aa18.94■□□□□ 0.62
SS18-219ENST00000581570 TRIM37O94972 964 aa18.93■□□□□ 0.62
SS18-219ENST00000581570 CAMKK2Q96RR4 588 aa18.93■□□□□ 0.62
SS18-219ENST00000581570 RGPD1P0DJD0 1748 aa18.92■□□□□ 0.62
SS18-219ENST00000581570 COL14A1Q05707 1796 aaKnown RBP18.92■□□□□ 0.62
SS18-219ENST00000581570 PAK3O75914 559 aaPredicted RBP18.92■□□□□ 0.62
SS18-219ENST00000581570 FAM196AQ6ZSG2 479 aa18.92■□□□□ 0.62
SS18-219ENST00000581570 NGDNQ8NEJ9 315 aaKnown RBP18.91■□□□□ 0.62
SS18-219ENST00000581570 TRAK1Q9UPV9 953 aa18.91■□□□□ 0.62
SS18-219ENST00000581570 PRR36Q9H6K5 1346 aa18.91■□□□□ 0.62
SS18-219ENST00000581570 DLC1Q96QB1 1528 aa18.9■□□□□ 0.62
SS18-219ENST00000581570 APBA3O96018 575 aa18.9■□□□□ 0.62
SS18-219ENST00000581570 SPATA31A1Q5TZJ5 1347 aa18.9■□□□□ 0.62
SS18-219ENST00000581570 MINK1Q8N4C8 1332 aaPredicted RBP18.9■□□□□ 0.62
SS18-219ENST00000581570 EIF3AQ14152 1382 aaKnown RBP18.9■□□□□ 0.62
SS18-219ENST00000581570 TRPM3Q9HCF6 1732 aaPredicted RBP18.89■□□□□ 0.61
SS18-219ENST00000581570 WASLO00401 505 aaPredicted RBP18.88■□□□□ 0.61
SS18-219ENST00000581570 STRN4Q9NRL3 753 aa18.88■□□□□ 0.61
SS18-219ENST00000581570 CHRNA2Q15822 529 aa18.87■□□□□ 0.61
SS18-219ENST00000581570 ALS2Q96Q42 1657 aa18.87■□□□□ 0.61
SS18-219ENST00000581570 THSD7AQ9UPZ6 1657 aa18.87■□□□□ 0.61
SS18-219ENST00000581570 ADGRB2O60241 1585 aa18.86■□□□□ 0.61
SS18-219ENST00000581570 PARD3Q8TEW0 1356 aa18.86■□□□□ 0.61
SS18-219ENST00000581570 KIAA0232Q92628 1395 aa18.86■□□□□ 0.61
SS18-219ENST00000581570 YY1P25490 414 aa18.86■□□□□ 0.61
SS18-219ENST00000581570 TNS1Q9HBL0 1735 aaKnown RBP18.84■□□□□ 0.61
SS18-219ENST00000581570 PDE3BQ13370 1112 aa18.84■□□□□ 0.61
SS18-219ENST00000581570 NBPF8Q3BBV2 869 aa18.84■□□□□ 0.61
SS18-219ENST00000581570 NBPF14Q5TI25 921 aa18.84■□□□□ 0.61
SS18-219ENST00000581570 USP35Q9P2H5 1018 aa18.84■□□□□ 0.61
SS18-219ENST00000581570 TULP4Q9NRJ4 1543 aa18.84■□□□□ 0.61
SS18-219ENST00000581570 EVA1CP58658 441 aa18.83■□□□□ 0.6
SS18-219ENST00000581570 ZC3H6P61129 1189 aaKnown RBP18.83■□□□□ 0.6
SS18-219ENST00000581570 ADGRB1O14514 1584 aa18.81■□□□□ 0.6
SS18-219ENST00000581570 NUTM2GQ5VZR2 741 aa18.81■□□□□ 0.6
SS18-219ENST00000581570 BARGINQ6ZT62 677 aa18.81■□□□□ 0.6
SS18-219ENST00000581570 KDM2AQ9Y2K7 1162 aa18.81■□□□□ 0.6
SS18-219ENST00000581570 NUDT16Q96DE0 195 aaKnown RBP18.8■□□□□ 0.6
SS18-219ENST00000581570 PPP1R1BQ9UD71 204 aaPredicted RBP18.79■□□□□ 0.6
SS18-219ENST00000581570 CRYBG1Q9Y4K1 1723 aa18.78■□□□□ 0.6
SS18-219ENST00000581570 SPON1Q9HCB6 807 aa18.78■□□□□ 0.6
SS18-219ENST00000581570 DCAF8L1A6NGE4 600 aa18.77■□□□□ 0.6
SS18-219ENST00000581570 LARP1Q6PKG0 1096 aaKnown RBP18.77■□□□□ 0.6
SS18-219ENST00000581570 TCP11L2Q8N4U5 519 aa18.77■□□□□ 0.6
SS18-219ENST00000581570 SSH2Q76I76 1423 aa18.76■□□□□ 0.59
SS18-219ENST00000581570 KCNQ2O43526 872 aa18.76■□□□□ 0.59
SS18-219ENST00000581570 DCAF11Q8TEB1 546 aa18.76■□□□□ 0.59
SS18-219ENST00000581570 ATP7BP35670 1465 aa18.74■□□□□ 0.59
SS18-219ENST00000581570 CDK19Q9BWU1 502 aa18.73■□□□□ 0.59
SS18-219ENST00000581570 THRAP3Q9Y2W1 955 aaKnown RBP18.73■□□□□ 0.59
SS18-219ENST00000581570 ACEP12821 1306 aa18.73■□□□□ 0.59
SS18-219ENST00000581570 ABTB2Q8N961 1025 aa18.72■□□□□ 0.59
SS18-219ENST00000581570 STAC3Q96MF2 364 aa18.72■□□□□ 0.59
SS18-219ENST00000581570 RREB1Q92766 1687 aa18.71■□□□□ 0.59
SS18-219ENST00000581570 C11orf95C9JLR9 678 aaPredicted RBP18.71■□□□□ 0.59
SS18-219ENST00000581570 CCDC61Q9Y6R9 512 aa18.71■□□□□ 0.59
SS18-219ENST00000581570 PHRF1Q9P1Y6 1649 aaKnown RBP18.71■□□□□ 0.58
SS18-219ENST00000581570 POLR3AO14802 1390 aaPredicted RBP18.7■□□□□ 0.58
SS18-219ENST00000581570 NINLQ9Y2I6 1382 aa18.7■□□□□ 0.58
SS18-219ENST00000581570 CAMTA1Q9Y6Y1 1673 aa18.7■□□□□ 0.58
SS18-219ENST00000581570 CPDO75976 1380 aa18.69■□□□□ 0.58
SS18-219ENST00000581570 NUP188Q5SRE5 1749 aa18.69■□□□□ 0.58
SS18-219ENST00000581570 PLEKHG3A1L390 1219 aa18.69■□□□□ 0.58
SS18-219ENST00000581570 GCP02774 474 aa18.67■□□□□ 0.58
SS18-219ENST00000581570 NLRP13Q86W25 1043 aa18.67■□□□□ 0.58
SS18-219ENST00000581570 USP19O94966 1318 aa18.67■□□□□ 0.58
SS18-219ENST00000581570 ITSN1Q15811 1721 aa18.66■□□□□ 0.58
SS18-219ENST00000581570 PLSCR1O15162 318 aa18.66■□□□□ 0.58
SS18-219ENST00000581570 RAB3GAP2Q9H2M9 1393 aa18.64■□□□□ 0.57
SS18-219ENST00000581570 NRKQ7Z2Y5 1582 aa18.64■□□□□ 0.57
SS18-219ENST00000581570 ZBTB7CA1YPR0 619 aa18.63■□□□□ 0.57
SS18-219ENST00000581570 ANO8Q9HCE9 1232 aaPredicted RBP18.63■□□□□ 0.57
SS18-219ENST00000581570 OVOS2A0A0G2JMS6 1433 aa18.63■□□□□ 0.57
SS18-219ENST00000581570 OVOS2A0A0J9YW53 1432 aa18.63■□□□□ 0.57
SS18-219ENST00000581570 OVOS2Q6IE36 1432 aa18.63■□□□□ 0.57
SS18-219ENST00000581570 DDB1Q16531 1140 aa18.62■□□□□ 0.57
SS18-219ENST00000581570 BCL11BQ9C0K0 894 aaPredicted RBP18.62■□□□□ 0.57
SS18-219ENST00000581570 CRB1P82279 1406 aa18.62■□□□□ 0.57
SS18-219ENST00000581570 COL5A2P05997 1499 aaPredicted RBP18.62■□□□□ 0.57
SS18-219ENST00000581570 LMO7Q8WWI1 1683 aa18.62■□□□□ 0.57
SS18-219ENST00000581570 ARHGEF28Q8N1W1 1705 aaKnown RBP18.6■□□□□ 0.57
SS18-219ENST00000581570 ZBTB7AO95365 584 aa18.59■□□□□ 0.57
SS18-219ENST00000581570 SRPK2P78362 688 aaKnown RBP18.59■□□□□ 0.57
SS18-219ENST00000581570 TOM1L2Q6ZVM7 507 aa18.59■□□□□ 0.57
SS18-219ENST00000581570 PTF1AQ7RTS3 328 aa18.59■□□□□ 0.57
SS18-219ENST00000581570 PDGFDQ9GZP0 370 aaPredicted RBP18.59■□□□□ 0.57
SS18-219ENST00000581570 PARP4Q9UKK3 1724 aaKnown RBP18.58■□□□□ 0.57
SS18-219ENST00000581570 NLRP6P59044 892 aa18.58■□□□□ 0.56
SS18-219ENST00000581570 PROM2Q8N271 834 aa18.58■□□□□ 0.56
SS18-219ENST00000581570 AATKQ6ZMQ8 1374 aa18.57■□□□□ 0.56
SS18-219ENST00000581570 ATF5Q9Y2D1 282 aaPredicted RBP18.57■□□□□ 0.56
SS18-219ENST00000581570 PPIP5K1Q6PFW1 1433 aa18.57■□□□□ 0.56
SS18-219ENST00000581570 TOPAZ1Q8N9V7 1692 aa18.57■□□□□ 0.56
SS18-219ENST00000581570 MARCH10Q8NA82 808 aaPredicted RBP18.56■□□□□ 0.56
SS18-219ENST00000581570 ZNF784Q8NCA9 323 aaPredicted RBP18.56■□□□□ 0.56
SS18-219ENST00000581570 BRD4O60885 1362 aaPredicted RBP18.55■□□□□ 0.56
SS18-219ENST00000581570 PTGER2P43116 358 aa18.55■□□□□ 0.56
SS18-219ENST00000581570 CABP2Q9NPB3 220 aa18.55■□□□□ 0.56
SS18-219ENST00000581570 PEAK1Q9H792 1746 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms