RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 MYBBP1AQ9BQG0 1328 aaKnown RBP34.1■■■■□ 3.05
SHMT1-207ENST00000580002 MORC1Q86VD1 984 aa34.1■■■■□ 3.05
SHMT1-207ENST00000580002 XPCQ01831 940 aaPredicted RBP34.09■■■■□ 3.05
SHMT1-207ENST00000580002 DDX17Q92841 729 aaKnown RBP34.09■■■■□ 3.05
SHMT1-207ENST00000580002 SSH2Q76I76 1423 aa34.09■■■■□ 3.05
SHMT1-207ENST00000580002 PPP2R1AP30153 589 aa34.08■■■■□ 3.05
SHMT1-207ENST00000580002 FBLN1P23142 703 aa34.05■■■■□ 3.04
SHMT1-207ENST00000580002 MRS2Q9HD23 443 aa34.04■■■■□ 3.04
SHMT1-207ENST00000580002 SLAIN2Q9P270 581 aa34.04■■■■□ 3.04
SHMT1-207ENST00000580002 NRKQ7Z2Y5 1582 aa34.03■■■■□ 3.04
SHMT1-207ENST00000580002 PSME1Q06323 249 aa34.02■■■■□ 3.04
SHMT1-207ENST00000580002 NSD2O96028 1365 aa34.01■■■■□ 3.03
SHMT1-207ENST00000580002 PAK3O75914 559 aaPredicted RBP34■■■■□ 3.03
SHMT1-207ENST00000580002 BRINP3Q76B58 766 aa33.99■■■■□ 3.03
SHMT1-207ENST00000580002 KIF20BQ96Q89 1820 aa33.98■■■■□ 3.03
SHMT1-207ENST00000580002 NUTM2GQ5VZR2 741 aa33.98■■■■□ 3.03
SHMT1-207ENST00000580002 NLRP13Q86W25 1043 aa33.98■■■■□ 3.03
SHMT1-207ENST00000580002 KRT28Q7Z3Y7 464 aa33.95■■■■□ 3.03
SHMT1-207ENST00000580002 TTC21AQ8NDW8 1320 aa33.93■■■■□ 3.02
SHMT1-207ENST00000580002 COG3Q96JB2 828 aa33.93■■■■□ 3.02
SHMT1-207ENST00000580002 YTHDC1Q96MU7 727 aaKnown RBP33.93■■■■□ 3.02
SHMT1-207ENST00000580002 BRD4O60885 1362 aaPredicted RBP33.92■■■■□ 3.02
SHMT1-207ENST00000580002 ANKRD26Q9UPS8 1709 aa33.9■■■■□ 3.02
SHMT1-207ENST00000580002 ABTB2Q8N961 1025 aa33.9■■■■□ 3.02
SHMT1-207ENST00000580002 FAM9BQ8IZU0 186 aa33.89■■■■□ 3.02
SHMT1-207ENST00000580002 KIF1AQ12756 1690 aa33.89■■■■□ 3.02
SHMT1-207ENST00000580002 MTHFSP49914 203 aa33.88■■■■□ 3.01
SHMT1-207ENST00000580002 PIK3C2AO00443 1686 aa33.88■■■■□ 3.01
SHMT1-207ENST00000580002 OVOS2A0A0J9YW53 1432 aa33.88■■■■□ 3.01
SHMT1-207ENST00000580002 OVOS2Q6IE36 1432 aa33.88■■■■□ 3.01
SHMT1-207ENST00000580002 NLRP6P59044 892 aa33.88■■■■□ 3.01
SHMT1-207ENST00000580002 SOX12O15370 315 aa33.87■■■■□ 3.01
SHMT1-207ENST00000580002 PLEKHG5O94827 1062 aa33.85■■■■□ 3.01
SHMT1-207ENST00000580002 PNISRQ8TF01 805 aaKnown RBP33.85■■■■□ 3.01
SHMT1-207ENST00000580002 LMOD2Q6P5Q4 547 aa33.83■■■■□ 3.01
SHMT1-207ENST00000580002 USP31Q70CQ4 1352 aa33.83■■■■□ 3.01
SHMT1-207ENST00000580002 RRS1Q15050 365 aaKnown RBP33.83■■■■□ 3.01
SHMT1-207ENST00000580002 POLKQ9UBT6 870 aa33.83■■■■□ 3.01
SHMT1-207ENST00000580002 NPHP3Q7Z494 1330 aa33.82■■■■□ 3
SHMT1-207ENST00000580002 TRPM3Q9HCF6 1732 aaPredicted RBP33.81■■■■□ 3
SHMT1-207ENST00000580002 EMILIN1Q9Y6C2 1016 aa33.8■■■■□ 3
SHMT1-207ENST00000580002 PXDNQ92626 1479 aa33.79■■■■□ 3
SHMT1-207ENST00000580002 SCAF1Q9H7N4 1312 aaKnown RBP33.77■■■■□ 3
SHMT1-207ENST00000580002 MARF1Q9Y4F3 1742 aaKnown RBP33.77■■■■□ 3
SHMT1-207ENST00000580002 PPM1GO15355 546 aaPredicted RBP33.77■■■■□ 3
SHMT1-207ENST00000580002 AATKQ6ZMQ8 1374 aa33.73■■■□□ 2.99
SHMT1-207ENST00000580002 SOS2Q07890 1332 aaPredicted RBP33.72■■■□□ 2.99
SHMT1-207ENST00000580002 MAP2P11137 1827 aaKnown RBP33.72■■■□□ 2.99
SHMT1-207ENST00000580002 SENP3-EIF4A1A0A087X0R7 540 aa33.71■■■□□ 2.99
SHMT1-207ENST00000580002 PIP4K2BP78356 416 aa33.71■■■□□ 2.99
SHMT1-207ENST00000580002 SBNO1A3KN83 1393 aa33.71■■■□□ 2.99
SHMT1-207ENST00000580002 SPATA31A3Q5VYP0 1347 aa33.7■■■□□ 2.99
SHMT1-207ENST00000580002 CERKQ8TCT0 537 aa33.7■■■□□ 2.99
SHMT1-207ENST00000580002 ROBO1Q9Y6N7 1651 aa33.69■■■□□ 2.98
SHMT1-207ENST00000580002 UBAP1LF5GYI3 381 aa33.68■■■□□ 2.98
SHMT1-207ENST00000580002 ALS2Q96Q42 1657 aa33.68■■■□□ 2.98
SHMT1-207ENST00000580002 CABLES1Q8TDN4 633 aa33.67■■■□□ 2.98
SHMT1-207ENST00000580002 ADAMTS8Q9UP79 889 aa33.67■■■□□ 2.98
SHMT1-207ENST00000580002 MAP3K19Q56UN5 1328 aa33.67■■■□□ 2.98
SHMT1-207ENST00000580002 TOM1O60784 492 aa33.67■■■□□ 2.98
SHMT1-207ENST00000580002 TNS3Q68CZ2 1445 aa33.66■■■□□ 2.98
SHMT1-207ENST00000580002 USP54Q70EL1 1684 aa33.65■■■□□ 2.98
SHMT1-207ENST00000580002 CFAP53Q96M91 514 aa33.64■■■□□ 2.98
SHMT1-207ENST00000580002 PNPLA6Q8IY17 1366 aa33.64■■■□□ 2.98
SHMT1-207ENST00000580002 COL3A1P02461 1466 aaPredicted RBP33.63■■■□□ 2.97
SHMT1-207ENST00000580002 GCP02774 474 aa33.63■■■□□ 2.97
SHMT1-207ENST00000580002 NHSL1Q5SYE7 1610 aa33.63■■■□□ 2.97
SHMT1-207ENST00000580002 USP19O94966 1318 aa33.62■■■□□ 2.97
SHMT1-207ENST00000580002 SMG6Q86US8 1419 aaKnown RBP33.62■■■□□ 2.97
SHMT1-207ENST00000580002 MED1Q15648 1581 aaPredicted RBP33.61■■■□□ 2.97
SHMT1-207ENST00000580002 PEAK1Q9H792 1746 aa33.61■■■□□ 2.97
SHMT1-207ENST00000580002 WDR43Q15061 677 aaKnown RBP eCLIP33.6■■■□□ 2.97
SHMT1-207ENST00000580002 HSP90AB2PQ58FF8 381 aa33.6■■■□□ 2.97
SHMT1-207ENST00000580002 NFAT5O94916 1531 aa33.58■■■□□ 2.97
SHMT1-207ENST00000580002 SHPRHQ149N8 1683 aa33.58■■■□□ 2.97
SHMT1-207ENST00000580002 ZBTB7CA1YPR0 619 aa33.58■■■□□ 2.97
SHMT1-207ENST00000580002 INSRP06213 1382 aa33.57■■■□□ 2.96
SHMT1-207ENST00000580002 SLIT3O75094 1523 aa33.57■■■□□ 2.96
SHMT1-207ENST00000580002 DIAPH1O60610 1272 aaKnown RBP33.55■■■□□ 2.96
SHMT1-207ENST00000580002 HNRNPUQ00839 825 aaKnown RBP eCLIP33.55■■■□□ 2.96
SHMT1-207ENST00000580002 AMPHP49418 695 aa33.55■■■□□ 2.96
SHMT1-207ENST00000580002 ZC3H6P61129 1189 aaKnown RBP33.55■■■□□ 2.96
SHMT1-207ENST00000580002 KCNH5Q8NCM2 988 aa33.55■■■□□ 2.96
SHMT1-207ENST00000580002 CDK12Q9NYV4 1490 aaPredicted RBP33.54■■■□□ 2.96
SHMT1-207ENST00000580002 ARHGEF10O15013 1369 aa33.54■■■□□ 2.96
SHMT1-207ENST00000580002 U2SURPO15042 1029 aaKnown RBP33.53■■■□□ 2.96
SHMT1-207ENST00000580002 IL13P35225 146 aa33.53■■■□□ 2.96
SHMT1-207ENST00000580002 CCDC146Q8IYE0 955 aa33.52■■■□□ 2.96
SHMT1-207ENST00000580002 AHDC1Q5TGY3 1603 aaPredicted RBP33.51■■■□□ 2.96
SHMT1-207ENST00000580002 IQSEC2Q5JU85 1478 aa33.51■■■□□ 2.96
SHMT1-207ENST00000580002 HOXC9P31274 260 aa33.51■■■□□ 2.95
SHMT1-207ENST00000580002 U2AF1L5P0DN76 240 aaPredicted RBP33.5■■■□□ 2.95
SHMT1-207ENST00000580002 U2AF1Q01081 240 aaKnown RBP eCLIP33.5■■■□□ 2.95
SHMT1-207ENST00000580002 EIF4A2Q14240 407 aaKnown RBP33.5■■■□□ 2.95
SHMT1-207ENST00000580002 ARHGEF25Q86VW2 580 aa33.5■■■□□ 2.95
SHMT1-207ENST00000580002 LRRC59Q96AG4 307 aaKnown RBP33.47■■■□□ 2.95
SHMT1-207ENST00000580002 FLT4P35916 1363 aa33.47■■■□□ 2.95
SHMT1-207ENST00000580002 NUDCQ9Y266 331 aa33.46■■■□□ 2.95
SHMT1-207ENST00000580002 LTN1O94822 1766 aa33.45■■■□□ 2.94
SHMT1-207ENST00000580002 IP6K1Q92551 441 aa33.44■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms