RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 FAM98CQ17RN3 349 aaKnown RBP19.88■□□□□ 0.77
CCDC40-216ENST00000576241 IFFO2Q5TF58 517 aa19.88■□□□□ 0.77
CCDC40-216ENST00000576241 CABLES1Q8TDN4 633 aa19.88■□□□□ 0.77
CCDC40-216ENST00000576241 DISP2A7MBM2 1401 aa19.87■□□□□ 0.77
CCDC40-216ENST00000576241 WASLO00401 505 aaPredicted RBP19.87■□□□□ 0.77
CCDC40-216ENST00000576241 TNS1Q9HBL0 1735 aaKnown RBP19.87■□□□□ 0.77
CCDC40-216ENST00000576241 TULP4Q9NRJ4 1543 aa19.86■□□□□ 0.77
CCDC40-216ENST00000576241 GPRASP1Q5JY77 1395 aa19.86■□□□□ 0.77
CCDC40-216ENST00000576241 PRR36Q9H6K5 1346 aa19.84■□□□□ 0.77
CCDC40-216ENST00000576241 DCAF8L1A6NGE4 600 aa19.83■□□□□ 0.77
CCDC40-216ENST00000576241 FAM83GA6ND36 823 aa19.82■□□□□ 0.76
CCDC40-216ENST00000576241 NGDNQ8NEJ9 315 aaKnown RBP19.82■□□□□ 0.76
CCDC40-216ENST00000576241 CAMKK2Q96RR4 588 aa19.82■□□□□ 0.76
CCDC40-216ENST00000576241 ARHGEF28Q8N1W1 1705 aaKnown RBP19.81■□□□□ 0.76
CCDC40-216ENST00000576241 NRAPQ86VF7 1730 aa19.8■□□□□ 0.76
CCDC40-216ENST00000576241 ABCA3Q99758 1704 aa19.8■□□□□ 0.76
CCDC40-216ENST00000576241 SENP3-EIF4A1A0A087X0R7 540 aa19.8■□□□□ 0.76
CCDC40-216ENST00000576241 PPP1R1BQ9UD71 204 aaPredicted RBP19.79■□□□□ 0.76
CCDC40-216ENST00000576241 KIAA1210Q9ULL0 1709 aa19.79■□□□□ 0.76
CCDC40-216ENST00000576241 NUDT16Q96DE0 195 aaKnown RBP19.78■□□□□ 0.76
CCDC40-216ENST00000576241 PAK3O75914 559 aaPredicted RBP19.77■□□□□ 0.76
CCDC40-216ENST00000576241 TRIM37O94972 964 aa19.77■□□□□ 0.76
CCDC40-216ENST00000576241 ATP7BP35670 1465 aa19.77■□□□□ 0.76
CCDC40-216ENST00000576241 CAMTA1Q9Y6Y1 1673 aa19.77■□□□□ 0.76
CCDC40-216ENST00000576241 TRPM3Q9HCF6 1732 aaPredicted RBP19.76■□□□□ 0.75
CCDC40-216ENST00000576241 ZNF784Q8NCA9 323 aaPredicted RBP19.76■□□□□ 0.75
CCDC40-216ENST00000576241 CDK19Q9BWU1 502 aa19.76■□□□□ 0.75
CCDC40-216ENST00000576241 BTG4Q9NY30 223 aa19.76■□□□□ 0.75
CCDC40-216ENST00000576241 NINLQ9Y2I6 1382 aa19.75■□□□□ 0.75
CCDC40-216ENST00000576241 NBPF1Q3BBV0 1214 aa19.75■□□□□ 0.75
CCDC40-216ENST00000576241 ITSN1Q15811 1721 aa19.74■□□□□ 0.75
CCDC40-216ENST00000576241 APBA3O96018 575 aa19.74■□□□□ 0.75
CCDC40-216ENST00000576241 SPON1Q9HCB6 807 aa19.74■□□□□ 0.75
CCDC40-216ENST00000576241 PARD3Q8TEW0 1356 aa19.73■□□□□ 0.75
CCDC40-216ENST00000576241 ALS2Q96Q42 1657 aa19.73■□□□□ 0.75
CCDC40-216ENST00000576241 THSD7AQ9UPZ6 1657 aa19.73■□□□□ 0.75
CCDC40-216ENST00000576241 RREB1Q92766 1687 aa19.72■□□□□ 0.75
CCDC40-216ENST00000576241 NUP188Q5SRE5 1749 aa19.72■□□□□ 0.75
CCDC40-216ENST00000576241 CCDC61Q9Y6R9 512 aa19.72■□□□□ 0.75
CCDC40-216ENST00000576241 SPATA31A5Q5VU36 1347 aa19.72■□□□□ 0.75
CCDC40-216ENST00000576241 SPATA31A7Q8IWB4 1347 aa19.72■□□□□ 0.75
CCDC40-216ENST00000576241 KCNQ2O43526 872 aa19.71■□□□□ 0.75
CCDC40-216ENST00000576241 NBPF8Q3BBV2 869 aa19.71■□□□□ 0.75
CCDC40-216ENST00000576241 NBPF14Q5TI25 921 aa19.71■□□□□ 0.75
CCDC40-216ENST00000576241 CENPJQ9HC77 1338 aaPredicted RBP19.71■□□□□ 0.75
CCDC40-216ENST00000576241 FAM196AQ6ZSG2 479 aa19.7■□□□□ 0.74
CCDC40-216ENST00000576241 L3MBTL2Q969R5 705 aa19.7■□□□□ 0.74
CCDC40-216ENST00000576241 SRPK2P78362 688 aaKnown RBP19.69■□□□□ 0.74
CCDC40-216ENST00000576241 ACEP12821 1306 aa19.69■□□□□ 0.74
CCDC40-216ENST00000576241 POLR3AO14802 1390 aaPredicted RBP19.69■□□□□ 0.74
CCDC40-216ENST00000576241 COL14A1Q05707 1796 aaKnown RBP19.68■□□□□ 0.74
CCDC40-216ENST00000576241 C1QTNF8P60827 252 aa19.68■□□□□ 0.74
CCDC40-216ENST00000576241 PLEKHG3A1L390 1219 aa19.67■□□□□ 0.74
CCDC40-216ENST00000576241 PRDM11Q9NQV5 511 aa19.67■□□□□ 0.74
CCDC40-216ENST00000576241 TOPAZ1Q8N9V7 1692 aa19.66■□□□□ 0.74
CCDC40-216ENST00000576241 NEUROD1Q13562 356 aa19.66■□□□□ 0.74
CCDC40-216ENST00000576241 SIN3AQ96ST3 1273 aa19.66■□□□□ 0.74
CCDC40-216ENST00000576241 PPIP5K1Q6PFW1 1433 aa19.63■□□□□ 0.73
CCDC40-216ENST00000576241 KIAA0232Q92628 1395 aa19.63■□□□□ 0.73
CCDC40-216ENST00000576241 NUTM2GQ5VZR2 741 aa19.63■□□□□ 0.73
CCDC40-216ENST00000576241 CABP2Q9NPB3 220 aa19.63■□□□□ 0.73
CCDC40-216ENST00000576241 CRYBG1Q9Y4K1 1723 aa19.62■□□□□ 0.73
CCDC40-216ENST00000576241 ABTB2Q8N961 1025 aa19.62■□□□□ 0.73
CCDC40-216ENST00000576241 UTRNP46939 3433 aa19.62■□□□□ 0.73
CCDC40-216ENST00000576241 ROCK2O75116 1388 aaKnown RBP19.61■□□□□ 0.73
CCDC40-216ENST00000576241 QRICH2Q9H0J4 1663 aa19.61■□□□□ 0.73
CCDC40-216ENST00000576241 SPATA31A1Q5TZJ5 1347 aa19.6■□□□□ 0.73
CCDC40-216ENST00000576241 ZC3H6P61129 1189 aaKnown RBP19.6■□□□□ 0.73
CCDC40-216ENST00000576241 PHRF1Q9P1Y6 1649 aaKnown RBP19.59■□□□□ 0.73
CCDC40-216ENST00000576241 EVC2Q86UK5 1308 aa19.59■□□□□ 0.73
CCDC40-216ENST00000576241 CHRNA2Q15822 529 aa19.59■□□□□ 0.73
CCDC40-216ENST00000576241 BRD4O60885 1362 aaPredicted RBP19.58■□□□□ 0.73
CCDC40-216ENST00000576241 TRPM1Q7Z4N2 1603 aa19.58■□□□□ 0.73
CCDC40-216ENST00000576241 NRKQ7Z2Y5 1582 aa19.57■□□□□ 0.72
CCDC40-216ENST00000576241 NLRP13Q86W25 1043 aa19.57■□□□□ 0.72
CCDC40-216ENST00000576241 STRN4Q9NRL3 753 aa19.57■□□□□ 0.72
CCDC40-216ENST00000576241 CHD4Q14839 1912 aa19.57■□□□□ 0.72
CCDC40-216ENST00000576241 USP19O94966 1318 aa19.56■□□□□ 0.72
CCDC40-216ENST00000576241 CABP1Q9NZU7 370 aa19.56■□□□□ 0.72
CCDC40-216ENST00000576241 PDE3BQ13370 1112 aa19.55■□□□□ 0.72
CCDC40-216ENST00000576241 USP6P35125 1406 aa19.54■□□□□ 0.72
CCDC40-216ENST00000576241 EVA1CP58658 441 aa19.54■□□□□ 0.72
CCDC40-216ENST00000576241 CPDO75976 1380 aa19.54■□□□□ 0.72
CCDC40-216ENST00000576241 CASZ1Q86V15 1759 aa19.53■□□□□ 0.72
CCDC40-216ENST00000576241 USP35Q9P2H5 1018 aa19.53■□□□□ 0.72
CCDC40-216ENST00000576241 MYOM1P52179 1685 aa19.52■□□□□ 0.72
CCDC40-216ENST00000576241 GCP02774 474 aa19.52■□□□□ 0.72
CCDC40-216ENST00000576241 PDGFDQ9GZP0 370 aaPredicted RBP19.52■□□□□ 0.72
CCDC40-216ENST00000576241 SSH2Q76I76 1423 aa19.51■□□□□ 0.71
CCDC40-216ENST00000576241 NLRP6P59044 892 aa19.5■□□□□ 0.71
CCDC40-216ENST00000576241 TONSLQ96HA7 1378 aa19.49■□□□□ 0.71
CCDC40-216ENST00000576241 CEP350Q5VT06 3117 aa19.49■□□□□ 0.71
CCDC40-216ENST00000576241 ZBTB7AO95365 584 aa19.49■□□□□ 0.71
CCDC40-216ENST00000576241 PTGER2P43116 358 aa19.49■□□□□ 0.71
CCDC40-216ENST00000576241 ANO8Q9HCE9 1232 aaPredicted RBP19.49■□□□□ 0.71
CCDC40-216ENST00000576241 BARGINQ6ZT62 677 aa19.48■□□□□ 0.71
CCDC40-216ENST00000576241 ZNF692Q9BU19 519 aaPredicted RBP19.48■□□□□ 0.71
CCDC40-216ENST00000576241 CARD11Q9BXL7 1154 aa19.48■□□□□ 0.71
CCDC40-216ENST00000576241 ZBTB7CA1YPR0 619 aa19.47■□□□□ 0.71
CCDC40-216ENST00000576241 SYT17Q9BSW7 474 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms