RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 NRXN1Q9ULB1 1477 aa25.21■■□□□ 1.63
VPS53-218ENST00000575207 GOLGB1Q14789 3259 aaKnown RBP25.21■■□□□ 1.63
VPS53-218ENST00000575207 PDE3BQ13370 1112 aa25.21■■□□□ 1.63
VPS53-218ENST00000575207 DLC1Q96QB1 1528 aa25.19■■□□□ 1.62
VPS53-218ENST00000575207 ATF5Q9Y2D1 282 aaPredicted RBP25.19■■□□□ 1.62
VPS53-218ENST00000575207 PLSCR1O15162 318 aa25.18■■□□□ 1.62
VPS53-218ENST00000575207 SGIP1Q9BQI5 828 aa25.17■■□□□ 1.62
VPS53-218ENST00000575207 RPGRIP1LQ68CZ1 1315 aa25.16■■□□□ 1.62
VPS53-218ENST00000575207 BARGINQ6ZT62 677 aa25.16■■□□□ 1.62
VPS53-218ENST00000575207 PLEKHH1Q9ULM0 1364 aa25.16■■□□□ 1.62
VPS53-218ENST00000575207 RGPD3A6NKT7 1758 aaPredicted RBP25.16■■□□□ 1.62
VPS53-218ENST00000575207 RGPD4Q7Z3J3 1758 aa25.16■■□□□ 1.62
VPS53-218ENST00000575207 MAP3K5Q99683 1374 aa25.15■■□□□ 1.62
VPS53-218ENST00000575207 SHANK3Q9BYB0 1731 aa25.15■■□□□ 1.62
VPS53-218ENST00000575207 KIF1BO60333 1816 aa25.14■■□□□ 1.62
VPS53-218ENST00000575207 HSPA6P17066 643 aa25.14■■□□□ 1.62
VPS53-218ENST00000575207 FAM50AQ14320 339 aaKnown RBP25.14■■□□□ 1.62
VPS53-218ENST00000575207 ABCC11Q96J66 1382 aa25.14■■□□□ 1.61
VPS53-218ENST00000575207 RGPD8O14715 1765 aaPredicted RBP25.13■■□□□ 1.61
VPS53-218ENST00000575207 C11orf95C9JLR9 678 aaPredicted RBP25.12■■□□□ 1.61
VPS53-218ENST00000575207 PRDM11Q9NQV5 511 aa25.12■■□□□ 1.61
VPS53-218ENST00000575207 ROCK1Q13464 1354 aa25.12■■□□□ 1.61
VPS53-218ENST00000575207 STK26Q9P289 416 aa25.11■■□□□ 1.61
VPS53-218ENST00000575207 GPR162Q16538 588 aa25.1■■□□□ 1.61
VPS53-218ENST00000575207 MTFR1LQ9H019 292 aa25.1■■□□□ 1.61
VPS53-218ENST00000575207 BCL11BQ9C0K0 894 aaPredicted RBP25.07■■□□□ 1.6
VPS53-218ENST00000575207 STRN4Q9NRL3 753 aa25.07■■□□□ 1.6
VPS53-218ENST00000575207 ALS2Q96Q42 1657 aa25.07■■□□□ 1.6
VPS53-218ENST00000575207 TRPM3Q9HCF6 1732 aaPredicted RBP25.06■■□□□ 1.6
VPS53-218ENST00000575207 ARXQ96QS3 562 aa25.06■■□□□ 1.6
VPS53-218ENST00000575207 USP35Q9P2H5 1018 aa25.06■■□□□ 1.6
VPS53-218ENST00000575207 PROM2Q8N271 834 aa25.05■■□□□ 1.6
VPS53-218ENST00000575207 KNDC1Q76NI1 1749 aa25.03■■□□□ 1.6
VPS53-218ENST00000575207 CRYBG1Q9Y4K1 1723 aa25.03■■□□□ 1.6
VPS53-218ENST00000575207 PMFBP1Q8TBY8 1022 aa25.02■■□□□ 1.6
VPS53-218ENST00000575207 IFT172Q9UG01 1749 aa25.02■■□□□ 1.6
VPS53-218ENST00000575207 PPLO60437 1756 aa25.02■■□□□ 1.6
VPS53-218ENST00000575207 APLP2Q06481 763 aa25.01■■□□□ 1.59
VPS53-218ENST00000575207 SIRT1Q96EB6 747 aa25.01■■□□□ 1.59
VPS53-218ENST00000575207 KIAA0232Q92628 1395 aa25.01■■□□□ 1.59
VPS53-218ENST00000575207 SLC15A2Q16348 729 aa25■■□□□ 1.59
VPS53-218ENST00000575207 TCP11L2Q8N4U5 519 aa25■■□□□ 1.59
VPS53-218ENST00000575207 STK32BQ9NY57 414 aa25■■□□□ 1.59
VPS53-218ENST00000575207 CHRNA2Q15822 529 aa24.99■■□□□ 1.59
VPS53-218ENST00000575207 SSH2Q76I76 1423 aa24.98■■□□□ 1.59
VPS53-218ENST00000575207 OVOS2A0A0G2JMS6 1433 aa24.97■■□□□ 1.59
VPS53-218ENST00000575207 OVOS2A0A0J9YW53 1432 aa24.97■■□□□ 1.59
VPS53-218ENST00000575207 OVOS2Q6IE36 1432 aa24.97■■□□□ 1.59
VPS53-218ENST00000575207 SLC34A2O95436 690 aa24.97■■□□□ 1.59
VPS53-218ENST00000575207 GPRASP1Q5JY77 1395 aa24.96■■□□□ 1.59
VPS53-218ENST00000575207 PEAK1Q9H792 1746 aa24.96■■□□□ 1.59
VPS53-218ENST00000575207 TMEM132EQ6IEE7 984 aa24.96■■□□□ 1.59
VPS53-218ENST00000575207 THRAP3Q9Y2W1 955 aaKnown RBP24.96■■□□□ 1.59
VPS53-218ENST00000575207 ANKARQ7Z5J8 1434 aa24.95■■□□□ 1.59
VPS53-218ENST00000575207 ADGRF5Q8IZF2 1346 aa24.95■■□□□ 1.58
VPS53-218ENST00000575207 ACIN1Q9UKV3 1341 aaKnown RBP24.93■■□□□ 1.58
VPS53-218ENST00000575207 EVA1CP58658 441 aa24.93■■□□□ 1.58
VPS53-218ENST00000575207 SBF2Q86WG5 1849 aa24.93■■□□□ 1.58
VPS53-218ENST00000575207 PARP4Q9UKK3 1724 aaKnown RBP24.92■■□□□ 1.58
VPS53-218ENST00000575207 LARP1Q6PKG0 1096 aaKnown RBP24.92■■□□□ 1.58
VPS53-218ENST00000575207 PTF1AQ7RTS3 328 aa24.92■■□□□ 1.58
VPS53-218ENST00000575207 YTHDC2Q9H6S0 1430 aaKnown RBP24.92■■□□□ 1.58
VPS53-218ENST00000575207 ATP10DQ9P241 1426 aa24.92■■□□□ 1.58
VPS53-218ENST00000575207 PRELPP51888 382 aa24.91■■□□□ 1.58
VPS53-218ENST00000575207 CAPN15O75808 1086 aa24.9■■□□□ 1.58
VPS53-218ENST00000575207 TXNRD1Q16881 649 aa24.9■■□□□ 1.58
VPS53-218ENST00000575207 GPBP1L1Q9HC44 474 aaPredicted RBP24.89■■□□□ 1.58
VPS53-218ENST00000575207 COL13A1Q5TAT6 717 aaPredicted RBP24.88■■□□□ 1.57
VPS53-218ENST00000575207 DHX57Q6P158 1386 aaKnown RBP24.88■■□□□ 1.57
VPS53-218ENST00000575207 ZC3H6P61129 1189 aaKnown RBP24.87■■□□□ 1.57
VPS53-218ENST00000575207 PELP1Q8IZL8 1130 aaKnown RBP24.87■■□□□ 1.57
VPS53-218ENST00000575207 ATP7BP35670 1465 aa24.86■■□□□ 1.57
VPS53-218ENST00000575207 GRIN3BO60391 1043 aa24.85■■□□□ 1.57
VPS53-218ENST00000575207 DNAJC5GQ8N7S2 189 aa24.85■■□□□ 1.57
VPS53-218ENST00000575207 AATKQ6ZMQ8 1374 aa24.83■■□□□ 1.57
VPS53-218ENST00000575207 PAK3O75914 559 aaPredicted RBP24.83■■□□□ 1.57
VPS53-218ENST00000575207 BCL9O00512 1426 aa24.83■■□□□ 1.57
VPS53-218ENST00000575207 APLP1P51693 650 aa24.81■■□□□ 1.56
VPS53-218ENST00000575207 PHRF1Q9P1Y6 1649 aaKnown RBP24.81■■□□□ 1.56
VPS53-218ENST00000575207 YBX3P16989 372 aaKnown RBP eCLIP24.79■■□□□ 1.56
VPS53-218ENST00000575207 PIK3C2GO75747 1445 aa24.78■■□□□ 1.56
VPS53-218ENST00000575207 ANKRD30BQ9BXX2 1392 aa24.78■■□□□ 1.56
VPS53-218ENST00000575207 DDB1Q16531 1140 aa24.77■■□□□ 1.56
VPS53-218ENST00000575207 PRAM1Q96QH2 718 aa24.77■■□□□ 1.56
VPS53-218ENST00000575207 LMO7Q8WWI1 1683 aa24.77■■□□□ 1.56
VPS53-218ENST00000575207 ADCY9O60503 1353 aa24.77■■□□□ 1.56
VPS53-218ENST00000575207 SAFB2Q14151 953 aaKnown RBP eCLIP24.76■■□□□ 1.55
VPS53-218ENST00000575207 TNS4Q8IZW8 715 aa24.76■■□□□ 1.55
VPS53-218ENST00000575207 KLHL34Q8N239 644 aa24.76■■□□□ 1.55
VPS53-218ENST00000575207 NLGN2Q8NFZ4 835 aa24.76■■□□□ 1.55
VPS53-218ENST00000575207 PRR36Q9H6K5 1346 aa24.76■■□□□ 1.55
VPS53-218ENST00000575207 NGDNQ8NEJ9 315 aaKnown RBP24.75■■□□□ 1.55
VPS53-218ENST00000575207 CPDO75976 1380 aa24.75■■□□□ 1.55
VPS53-218ENST00000575207 LRRC37A3O60309 1634 aa24.74■■□□□ 1.55
VPS53-218ENST00000575207 MARCH10Q8NA82 808 aaPredicted RBP24.72■■□□□ 1.55
VPS53-218ENST00000575207 SLC16A10Q8TF71 515 aa24.72■■□□□ 1.55
VPS53-218ENST00000575207 PCDH10Q9P2E7 1040 aa24.72■■□□□ 1.55
VPS53-218ENST00000575207 CRB1P82279 1406 aa24.71■■□□□ 1.55
VPS53-218ENST00000575207 EIF3AQ14152 1382 aaKnown RBP24.71■■□□□ 1.55
VPS53-218ENST00000575207 POLD1P28340 1107 aa24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms