RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 NEUROD1Q13562 356 aa11.28□□□□□ -0.6
CDH3-209ENST00000569080 PPIP5K1Q6PFW1 1433 aa11.27□□□□□ -0.6
CDH3-209ENST00000569080 PLEKHG3A1L390 1219 aa11.27□□□□□ -0.61
CDH3-209ENST00000569080 UPF1Q92900 1129 aaKnown RBP eCLIP11.27□□□□□ -0.61
CDH3-209ENST00000569080 NGDNQ8NEJ9 315 aaKnown RBP11.26□□□□□ -0.61
CDH3-209ENST00000569080 CCDC61Q9Y6R9 512 aa11.26□□□□□ -0.61
CDH3-209ENST00000569080 SBNO2Q9Y2G9 1366 aa11.26□□□□□ -0.61
CDH3-209ENST00000569080 AKAP12Q02952 1782 aa11.26□□□□□ -0.61
CDH3-209ENST00000569080 PIK3C2AO00443 1686 aa11.25□□□□□ -0.61
CDH3-209ENST00000569080 UNC5CLQ8IV45 518 aa11.25□□□□□ -0.61
CDH3-209ENST00000569080 ACEP12821 1306 aa11.25□□□□□ -0.61
CDH3-209ENST00000569080 BRWD3Q6RI45 1802 aa11.25□□□□□ -0.61
CDH3-209ENST00000569080 SSH2Q76I76 1423 aa11.25□□□□□ -0.61
CDH3-209ENST00000569080 LMO7Q8WWI1 1683 aa11.24□□□□□ -0.61
CDH3-209ENST00000569080 LMOD2Q6P5Q4 547 aa11.24□□□□□ -0.61
CDH3-209ENST00000569080 GJD4Q96KN9 370 aaPredicted RBP11.24□□□□□ -0.61
CDH3-209ENST00000569080 CABP2Q9NPB3 220 aa11.24□□□□□ -0.61
CDH3-209ENST00000569080 TONSLQ96HA7 1378 aa11.24□□□□□ -0.61
CDH3-209ENST00000569080 USP6P35125 1406 aa11.24□□□□□ -0.61
CDH3-209ENST00000569080 FAM83GA6ND36 823 aa11.23□□□□□ -0.61
CDH3-209ENST00000569080 USP19O94966 1318 aa11.23□□□□□ -0.61
CDH3-209ENST00000569080 THSD7AQ9UPZ6 1657 aa11.23□□□□□ -0.61
CDH3-209ENST00000569080 MON2Q7Z3U7 1717 aa11.23□□□□□ -0.61
CDH3-209ENST00000569080 SLIT3O75094 1523 aa11.22□□□□□ -0.61
CDH3-209ENST00000569080 PLEKHG5O94827 1062 aa11.22□□□□□ -0.61
CDH3-209ENST00000569080 HAP1P54257 671 aaPredicted RBP11.22□□□□□ -0.61
CDH3-209ENST00000569080 SRPK2P78362 688 aaKnown RBP11.22□□□□□ -0.61
CDH3-209ENST00000569080 VPS72Q15906 364 aa11.22□□□□□ -0.61
CDH3-209ENST00000569080 BRD4O60885 1362 aaPredicted RBP11.21□□□□□ -0.61
CDH3-209ENST00000569080 ATAD2Q6PL18 1390 aa11.21□□□□□ -0.61
CDH3-209ENST00000569080 KIAA0232Q92628 1395 aa11.21□□□□□ -0.61
CDH3-209ENST00000569080 PAK3O75914 559 aaPredicted RBP11.21□□□□□ -0.61
CDH3-209ENST00000569080 USP54Q70EL1 1684 aa11.2□□□□□ -0.62
CDH3-209ENST00000569080 CPSF1Q10570 1443 aaKnown RBP11.2□□□□□ -0.62
CDH3-209ENST00000569080 EVC2Q86UK5 1308 aa11.2□□□□□ -0.62
CDH3-209ENST00000569080 CD163L1Q9NR16 1453 aa11.19□□□□□ -0.62
CDH3-209ENST00000569080 CPDO75976 1380 aa11.19□□□□□ -0.62
CDH3-209ENST00000569080 CABP1Q9NZU7 370 aa11.19□□□□□ -0.62
CDH3-209ENST00000569080 CAMTA1Q9Y6Y1 1673 aa11.18□□□□□ -0.62
CDH3-209ENST00000569080 ONECUT3O60422 494 aaPredicted RBP11.18□□□□□ -0.62
CDH3-209ENST00000569080 NUTM2GQ5VZR2 741 aa11.18□□□□□ -0.62
CDH3-209ENST00000569080 CARD11Q9BXL7 1154 aa11.18□□□□□ -0.62
CDH3-209ENST00000569080 BTG4Q9NY30 223 aa11.18□□□□□ -0.62
CDH3-209ENST00000569080 SRCAPQ6ZRS2 3230 aa11.17□□□□□ -0.62
CDH3-209ENST00000569080 PRDM11Q9NQV5 511 aa11.17□□□□□ -0.62
CDH3-209ENST00000569080 COL18A1P39060 1754 aa11.17□□□□□ -0.62
CDH3-209ENST00000569080 SPATA31A5Q5VU36 1347 aa11.16□□□□□ -0.62
CDH3-209ENST00000569080 SPATA31A7Q8IWB4 1347 aa11.16□□□□□ -0.62
CDH3-209ENST00000569080 NFAT5O94916 1531 aa11.16□□□□□ -0.62
CDH3-209ENST00000569080 ABTB2Q8N961 1025 aa11.16□□□□□ -0.62
CDH3-209ENST00000569080 COL5A2P05997 1499 aaPredicted RBP11.15□□□□□ -0.62
CDH3-209ENST00000569080 CHRNA2Q15822 529 aa11.15□□□□□ -0.62
CDH3-209ENST00000569080 SEPT12Q8IYM1 358 aa11.15□□□□□ -0.62
CDH3-209ENST00000569080 TESK2Q96S53 571 aa11.15□□□□□ -0.62
CDH3-209ENST00000569080 ZC3H6P61129 1189 aaKnown RBP11.14□□□□□ -0.63
CDH3-209ENST00000569080 WNK3Q9BYP7 1800 aa11.14□□□□□ -0.63
CDH3-209ENST00000569080 SPATA31A1Q5TZJ5 1347 aa11.13□□□□□ -0.63
CDH3-209ENST00000569080 TTC21BQ7Z4L5 1316 aa11.13□□□□□ -0.63
CDH3-209ENST00000569080 TNS1Q9HBL0 1735 aaKnown RBP11.13□□□□□ -0.63
CDH3-209ENST00000569080 BLMP54132 1417 aaPredicted RBP11.13□□□□□ -0.63
CDH3-209ENST00000569080 GCP02774 474 aa11.13□□□□□ -0.63
CDH3-209ENST00000569080 NLRP13Q86W25 1043 aa11.13□□□□□ -0.63
CDH3-209ENST00000569080 ABCC6O95255 1503 aa11.13□□□□□ -0.63
CDH3-209ENST00000569080 PARP4Q9UKK3 1724 aaKnown RBP11.12□□□□□ -0.63
CDH3-209ENST00000569080 FAM98CQ17RN3 349 aaKnown RBP11.12□□□□□ -0.63
CDH3-209ENST00000569080 CCDC9Q9Y3X0 531 aaKnown RBP11.12□□□□□ -0.63
CDH3-209ENST00000569080 A0A1W2PP64 1363 aa11.12□□□□□ -0.63
CDH3-209ENST00000569080 KTN1Q86UP2 1357 aaKnown RBP11.12□□□□□ -0.63
CDH3-209ENST00000569080 TTC21AQ8NDW8 1320 aa11.11□□□□□ -0.63
CDH3-209ENST00000569080 CLSPNQ9HAW4 1339 aa11.11□□□□□ -0.63
CDH3-209ENST00000569080 LRRC37A3O60309 1634 aa11.11□□□□□ -0.63
CDH3-209ENST00000569080 RGPD1P0DJD0 1748 aa11.11□□□□□ -0.63
CDH3-209ENST00000569080 AATKQ6ZMQ8 1374 aa11.11□□□□□ -0.63
CDH3-209ENST00000569080 USP31Q70CQ4 1352 aa11.11□□□□□ -0.63
CDH3-209ENST00000569080 USP47Q96K76 1375 aa11.11□□□□□ -0.63
CDH3-209ENST00000569080 MYOM1P52179 1685 aa11.11□□□□□ -0.63
CDH3-209ENST00000569080 RGPD5Q99666 1765 aa11.11□□□□□ -0.63
CDH3-209ENST00000569080 OVOS2A0A0J9YW53 1432 aa11.1□□□□□ -0.63
CDH3-209ENST00000569080 OVOS2Q6IE36 1432 aa11.1□□□□□ -0.63
CDH3-209ENST00000569080 EDC4Q6P2E9 1401 aaKnown RBP11.1□□□□□ -0.63
CDH3-209ENST00000569080 ST20-MTHFSA0A0A6YYL1 179 aa11.1□□□□□ -0.63
CDH3-209ENST00000569080 NLRP6P59044 892 aa11.1□□□□□ -0.63
CDH3-209ENST00000569080 KRT27Q7Z3Y8 459 aa11.1□□□□□ -0.63
CDH3-209ENST00000569080 PUS7Q96PZ0 661 aaKnown RBP11.1□□□□□ -0.63
CDH3-209ENST00000569080 ZNF692Q9BU19 519 aaPredicted RBP11.1□□□□□ -0.63
CDH3-209ENST00000569080 LTN1O94822 1766 aa11.09□□□□□ -0.63
CDH3-209ENST00000569080 NINLQ9Y2I6 1382 aa11.09□□□□□ -0.63
CDH3-209ENST00000569080 LARP1Q6PKG0 1096 aaKnown RBP11.09□□□□□ -0.63
CDH3-209ENST00000569080 STRN4Q9NRL3 753 aa11.09□□□□□ -0.63
CDH3-209ENST00000569080 PEAK1Q9H792 1746 aa11.09□□□□□ -0.63
CDH3-209ENST00000569080 CRB1P82279 1406 aa11.09□□□□□ -0.63
CDH3-209ENST00000569080 BARGINQ6ZT62 677 aa11.08□□□□□ -0.64
CDH3-209ENST00000569080 CCDC125Q86Z20 511 aa11.08□□□□□ -0.64
CDH3-209ENST00000569080 SLC12A5Q9H2X9 1139 aa11.08□□□□□ -0.64
CDH3-209ENST00000569080 ARHGEF25Q86VW2 580 aa11.07□□□□□ -0.64
CDH3-209ENST00000569080 DISP2A7MBM2 1401 aa11.07□□□□□ -0.64
CDH3-209ENST00000569080 NME9Q86XW9 330 aa11.06□□□□□ -0.64
CDH3-209ENST00000569080 PCGF6Q9BYE7 350 aa11.06□□□□□ -0.64
CDH3-209ENST00000569080 ZRANB1Q9UGI0 708 aa11.06□□□□□ -0.64
CDH3-209ENST00000569080 TIMELESSQ9UNS1 1208 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms