RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 PLEKHH1Q9ULM0 1364 aa17.4■□□□□ 0.38
CDH3-208ENST00000569036 TRPM3Q9HCF6 1732 aaPredicted RBP17.4■□□□□ 0.38
CDH3-208ENST00000569036 SPATA31A1Q5TZJ5 1347 aa17.4■□□□□ 0.38
CDH3-208ENST00000569036 RGPD3A6NKT7 1758 aaPredicted RBP17.4■□□□□ 0.38
CDH3-208ENST00000569036 RGPD4Q7Z3J3 1758 aa17.4■□□□□ 0.38
CDH3-208ENST00000569036 CRYBG1Q9Y4K1 1723 aa17.39■□□□□ 0.37
CDH3-208ENST00000569036 PTGER2P43116 358 aa17.39■□□□□ 0.37
CDH3-208ENST00000569036 ROCK1Q13464 1354 aa17.39■□□□□ 0.37
CDH3-208ENST00000569036 ALS2Q96Q42 1657 aa17.39■□□□□ 0.37
CDH3-208ENST00000569036 FHDC1Q9C0D6 1143 aaPredicted RBP17.38■□□□□ 0.37
CDH3-208ENST00000569036 PDGFDQ9GZP0 370 aaPredicted RBP17.38■□□□□ 0.37
CDH3-208ENST00000569036 ANO8Q9HCE9 1232 aaPredicted RBP17.38■□□□□ 0.37
CDH3-208ENST00000569036 ZBTB7AO95365 584 aa17.37■□□□□ 0.37
CDH3-208ENST00000569036 SYT17Q9BSW7 474 aa17.37■□□□□ 0.37
CDH3-208ENST00000569036 STK26Q9P289 416 aa17.37■□□□□ 0.37
CDH3-208ENST00000569036 DLC1Q96QB1 1528 aa17.37■□□□□ 0.37
CDH3-208ENST00000569036 GOLGB1Q14789 3259 aaKnown RBP17.36■□□□□ 0.37
CDH3-208ENST00000569036 SHANK3Q9BYB0 1731 aa17.35■□□□□ 0.37
CDH3-208ENST00000569036 RPGRIP1LQ68CZ1 1315 aa17.34■□□□□ 0.37
CDH3-208ENST00000569036 PDE3BQ13370 1112 aa17.33■□□□□ 0.36
CDH3-208ENST00000569036 ABCC11Q96J66 1382 aa17.32■□□□□ 0.36
CDH3-208ENST00000569036 APLP2Q06481 763 aa17.32■□□□□ 0.36
CDH3-208ENST00000569036 PRDM11Q9NQV5 511 aa17.32■□□□□ 0.36
CDH3-208ENST00000569036 ATF5Q9Y2D1 282 aaPredicted RBP17.32■□□□□ 0.36
CDH3-208ENST00000569036 STRN4Q9NRL3 753 aa17.29■□□□□ 0.36
CDH3-208ENST00000569036 SBF2Q86WG5 1849 aa17.28■□□□□ 0.36
CDH3-208ENST00000569036 BARGINQ6ZT62 677 aa17.28■□□□□ 0.36
CDH3-208ENST00000569036 USP35Q9P2H5 1018 aa17.28■□□□□ 0.36
CDH3-208ENST00000569036 PEAK1Q9H792 1746 aa17.27■□□□□ 0.36
CDH3-208ENST00000569036 PMFBP1Q8TBY8 1022 aa17.27■□□□□ 0.36
CDH3-208ENST00000569036 SGIP1Q9BQI5 828 aa17.27■□□□□ 0.36
CDH3-208ENST00000569036 PARP4Q9UKK3 1724 aaKnown RBP17.27■□□□□ 0.35
CDH3-208ENST00000569036 PLSCR1O15162 318 aa17.26■□□□□ 0.35
CDH3-208ENST00000569036 KIAA0232Q92628 1395 aa17.26■□□□□ 0.35
CDH3-208ENST00000569036 MAP3K5Q99683 1374 aa17.26■□□□□ 0.35
CDH3-208ENST00000569036 ADGRF5Q8IZF2 1346 aa17.25■□□□□ 0.35
CDH3-208ENST00000569036 TMEM132EQ6IEE7 984 aa17.25■□□□□ 0.35
CDH3-208ENST00000569036 PHRF1Q9P1Y6 1649 aaKnown RBP17.25■□□□□ 0.35
CDH3-208ENST00000569036 SSH2Q76I76 1423 aa17.24■□□□□ 0.35
CDH3-208ENST00000569036 YTHDC2Q9H6S0 1430 aaKnown RBP17.24■□□□□ 0.35
CDH3-208ENST00000569036 CHRNA2Q15822 529 aa17.24■□□□□ 0.35
CDH3-208ENST00000569036 BCL11BQ9C0K0 894 aaPredicted RBP17.24■□□□□ 0.35
CDH3-208ENST00000569036 ANKARQ7Z5J8 1434 aa17.23■□□□□ 0.35
CDH3-208ENST00000569036 GPR162Q16538 588 aa17.23■□□□□ 0.35
CDH3-208ENST00000569036 MTFR1LQ9H019 292 aa17.23■□□□□ 0.35
CDH3-208ENST00000569036 OVOS2A0A0G2JMS6 1433 aa17.21■□□□□ 0.35
CDH3-208ENST00000569036 OVOS2A0A0J9YW53 1432 aa17.21■□□□□ 0.35
CDH3-208ENST00000569036 OVOS2Q6IE36 1432 aa17.21■□□□□ 0.35
CDH3-208ENST00000569036 GPRASP1Q5JY77 1395 aa17.21■□□□□ 0.35
CDH3-208ENST00000569036 ACIN1Q9UKV3 1341 aaKnown RBP17.21■□□□□ 0.34
CDH3-208ENST00000569036 C11orf95C9JLR9 678 aaPredicted RBP17.2■□□□□ 0.34
CDH3-208ENST00000569036 HSPA6P17066 643 aa17.2■□□□□ 0.34
CDH3-208ENST00000569036 PROM2Q8N271 834 aa17.2■□□□□ 0.34
CDH3-208ENST00000569036 TCP11L2Q8N4U5 519 aa17.2■□□□□ 0.34
CDH3-208ENST00000569036 ARXQ96QS3 562 aa17.2■□□□□ 0.34
CDH3-208ENST00000569036 SIRT1Q96EB6 747 aa17.19■□□□□ 0.34
CDH3-208ENST00000569036 PTF1AQ7RTS3 328 aa17.18■□□□□ 0.34
CDH3-208ENST00000569036 STK32BQ9NY57 414 aa17.18■□□□□ 0.34
CDH3-208ENST00000569036 LARP1Q6PKG0 1096 aaKnown RBP17.17■□□□□ 0.34
CDH3-208ENST00000569036 LRRC37A3O60309 1634 aa17.17■□□□□ 0.34
CDH3-208ENST00000569036 LMO7Q8WWI1 1683 aa17.16■□□□□ 0.34
CDH3-208ENST00000569036 PIK3C2GO75747 1445 aa17.16■□□□□ 0.34
CDH3-208ENST00000569036 EVA1CP58658 441 aa17.16■□□□□ 0.34
CDH3-208ENST00000569036 SLC15A2Q16348 729 aa17.16■□□□□ 0.34
CDH3-208ENST00000569036 ATP7BP35670 1465 aa17.16■□□□□ 0.34
CDH3-208ENST00000569036 ZC3H6P61129 1189 aaKnown RBP17.15■□□□□ 0.34
CDH3-208ENST00000569036 PAK3O75914 559 aaPredicted RBP17.14■□□□□ 0.33
CDH3-208ENST00000569036 SAFB2Q14151 953 aaKnown RBP eCLIP17.14■□□□□ 0.33
CDH3-208ENST00000569036 THRAP3Q9Y2W1 955 aaKnown RBP17.14■□□□□ 0.33
CDH3-208ENST00000569036 DHX57Q6P158 1386 aaKnown RBP17.14■□□□□ 0.33
CDH3-208ENST00000569036 ATP10DQ9P241 1426 aa17.13■□□□□ 0.33
CDH3-208ENST00000569036 PELP1Q8IZL8 1130 aaKnown RBP17.13■□□□□ 0.33
CDH3-208ENST00000569036 LOC105371045A0A1W2PR82 267 aa17.12■□□□□ 0.33
CDH3-208ENST00000569036 ITGAEP38570 1179 aa17.12■□□□□ 0.33
CDH3-208ENST00000569036 PRAM1Q96QH2 718 aa17.12■□□□□ 0.33
CDH3-208ENST00000569036 ANKRD30BQ9BXX2 1392 aa17.12■□□□□ 0.33
CDH3-208ENST00000569036 TXNRD1Q16881 649 aa17.11■□□□□ 0.33
CDH3-208ENST00000569036 PRR36Q9H6K5 1346 aa17.11■□□□□ 0.33
CDH3-208ENST00000569036 TULP4Q9NRJ4 1543 aa17.1■□□□□ 0.33
CDH3-208ENST00000569036 CAPN15O75808 1086 aa17.09■□□□□ 0.33
CDH3-208ENST00000569036 PAPPAQ13219 1627 aa17.09■□□□□ 0.33
CDH3-208ENST00000569036 AKAP12Q02952 1782 aa17.09■□□□□ 0.33
CDH3-208ENST00000569036 WNK3Q9BYP7 1800 aa17.07■□□□□ 0.32
CDH3-208ENST00000569036 TOPAZ1Q8N9V7 1692 aa17.07■□□□□ 0.32
CDH3-208ENST00000569036 COL5A2P05997 1499 aaPredicted RBP17.07■□□□□ 0.32
CDH3-208ENST00000569036 SPATA31E1Q6ZUB1 1445 aa17.07■□□□□ 0.32
CDH3-208ENST00000569036 AATKQ6ZMQ8 1374 aa17.07■□□□□ 0.32
CDH3-208ENST00000569036 KLHL34Q8N239 644 aa17.07■□□□□ 0.32
CDH3-208ENST00000569036 NGDNQ8NEJ9 315 aaKnown RBP17.07■□□□□ 0.32
CDH3-208ENST00000569036 GPBP1L1Q9HC44 474 aaPredicted RBP17.07■□□□□ 0.32
CDH3-208ENST00000569036 BCL9O00512 1426 aa17.06■□□□□ 0.32
CDH3-208ENST00000569036 EIF3AQ14152 1382 aaKnown RBP17.06■□□□□ 0.32
CDH3-208ENST00000569036 RGL3Q3MIN7 710 aa17.06■□□□□ 0.32
CDH3-208ENST00000569036 COL24A1Q17RW2 1714 aa17.06■□□□□ 0.32
CDH3-208ENST00000569036 CPDO75976 1380 aa17.05■□□□□ 0.32
CDH3-208ENST00000569036 DDB1Q16531 1140 aa17.05■□□□□ 0.32
CDH3-208ENST00000569036 NUTM2GQ5VZR2 741 aa17.05■□□□□ 0.32
CDH3-208ENST00000569036 CRB1P82279 1406 aa17.04■□□□□ 0.32
CDH3-208ENST00000569036 YBX3P16989 372 aaKnown RBP eCLIP17.04■□□□□ 0.32
CDH3-208ENST00000569036 NLGN2Q8NFZ4 835 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms