RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 TMEM132EQ6IEE7 984 aa16.69■□□□□ 0.26
CLN3-226ENST00000567160 SIRT1Q96EB6 747 aa16.69■□□□□ 0.26
CLN3-226ENST00000567160 NUP188Q5SRE5 1749 aa16.67■□□□□ 0.26
CLN3-226ENST00000567160 RAB3GAP2Q9H2M9 1393 aa16.66■□□□□ 0.26
CLN3-226ENST00000567160 SLC4A1APQ9BWU0 796 aaKnown RBP16.66■□□□□ 0.26
CLN3-226ENST00000567160 ALS2Q96Q42 1657 aa16.65■□□□□ 0.26
CLN3-226ENST00000567160 GPRASP1Q5JY77 1395 aa16.65■□□□□ 0.26
CLN3-226ENST00000567160 TRPM3Q9HCF6 1732 aaPredicted RBP16.65■□□□□ 0.26
CLN3-226ENST00000567160 PIK3C2GO75747 1445 aa16.65■□□□□ 0.26
CLN3-226ENST00000567160 ANKARQ7Z5J8 1434 aa16.65■□□□□ 0.26
CLN3-226ENST00000567160 KCNQ2O43526 872 aa16.65■□□□□ 0.26
CLN3-226ENST00000567160 PMFBP1Q8TBY8 1022 aa16.64■□□□□ 0.25
CLN3-226ENST00000567160 PRDM11Q9NQV5 511 aa16.64■□□□□ 0.25
CLN3-226ENST00000567160 SPATA31A1Q5TZJ5 1347 aa16.64■□□□□ 0.25
CLN3-226ENST00000567160 RGL3Q3MIN7 710 aa16.63■□□□□ 0.25
CLN3-226ENST00000567160 PDE3BQ13370 1112 aa16.62■□□□□ 0.25
CLN3-226ENST00000567160 DHX57Q6P158 1386 aaKnown RBP16.61■□□□□ 0.25
CLN3-226ENST00000567160 CRYBG1Q9Y4K1 1723 aa16.6■□□□□ 0.25
CLN3-226ENST00000567160 SENP3-EIF4A1A0A087X0R7 540 aa16.6■□□□□ 0.25
CLN3-226ENST00000567160 EIF3AQ14152 1382 aaKnown RBP16.6■□□□□ 0.25
CLN3-226ENST00000567160 CAMTA1Q9Y6Y1 1673 aa16.59■□□□□ 0.25
CLN3-226ENST00000567160 ZNF784Q8NCA9 323 aaPredicted RBP16.59■□□□□ 0.25
CLN3-226ENST00000567160 PRAM1Q96QH2 718 aa16.59■□□□□ 0.25
CLN3-226ENST00000567160 SPATA31E1Q6ZUB1 1445 aa16.59■□□□□ 0.25
CLN3-226ENST00000567160 SAFB2Q14151 953 aaKnown RBP eCLIP16.58■□□□□ 0.24
CLN3-226ENST00000567160 IFFO2Q5TF58 517 aa16.58■□□□□ 0.24
CLN3-226ENST00000567160 STRN4Q9NRL3 753 aa16.58■□□□□ 0.24
CLN3-226ENST00000567160 ACIN1Q9UKV3 1341 aaKnown RBP16.58■□□□□ 0.24
CLN3-226ENST00000567160 C11orf95C9JLR9 678 aaPredicted RBP16.57■□□□□ 0.24
CLN3-226ENST00000567160 PAK3O75914 559 aaPredicted RBP16.57■□□□□ 0.24
CLN3-226ENST00000567160 BARGINQ6ZT62 677 aa16.57■□□□□ 0.24
CLN3-226ENST00000567160 POGKQ9P215 609 aa16.57■□□□□ 0.24
CLN3-226ENST00000567160 C14orf93Q9H972 538 aaKnown RBP16.56■□□□□ 0.24
CLN3-226ENST00000567160 KIAA0232Q92628 1395 aa16.55■□□□□ 0.24
CLN3-226ENST00000567160 USP35Q9P2H5 1018 aa16.55■□□□□ 0.24
CLN3-226ENST00000567160 DLC1Q96QB1 1528 aa16.55■□□□□ 0.24
CLN3-226ENST00000567160 CHD4Q14839 1912 aa16.55■□□□□ 0.24
CLN3-226ENST00000567160 RGPD3A6NKT7 1758 aaPredicted RBP16.54■□□□□ 0.24
CLN3-226ENST00000567160 RGPD4Q7Z3J3 1758 aa16.54■□□□□ 0.24
CLN3-226ENST00000567160 EVA1CP58658 441 aa16.54■□□□□ 0.24
CLN3-226ENST00000567160 NGDNQ8NEJ9 315 aaKnown RBP16.54■□□□□ 0.24
CLN3-226ENST00000567160 CHRNA2Q15822 529 aa16.53■□□□□ 0.24
CLN3-226ENST00000567160 PHRF1Q9P1Y6 1649 aaKnown RBP16.52■□□□□ 0.24
CLN3-226ENST00000567160 NRKQ7Z2Y5 1582 aa16.52■□□□□ 0.24
CLN3-226ENST00000567160 TULP4Q9NRJ4 1543 aa16.52■□□□□ 0.24
CLN3-226ENST00000567160 C1QTNF8P60827 252 aa16.52■□□□□ 0.24
CLN3-226ENST00000567160 SSH2Q76I76 1423 aa16.52■□□□□ 0.23
CLN3-226ENST00000567160 TCP11L2Q8N4U5 519 aa16.51■□□□□ 0.23
CLN3-226ENST00000567160 CASZ1Q86V15 1759 aa16.51■□□□□ 0.23
CLN3-226ENST00000567160 CFAP70Q5T0N1 1121 aa16.5■□□□□ 0.23
CLN3-226ENST00000567160 THRAP3Q9Y2W1 955 aaKnown RBP16.5■□□□□ 0.23
CLN3-226ENST00000567160 UTRNP46939 3433 aa16.5■□□□□ 0.23
CLN3-226ENST00000567160 ATP7BP35670 1465 aa16.49■□□□□ 0.23
CLN3-226ENST00000567160 ZC3H6P61129 1189 aaKnown RBP16.49■□□□□ 0.23
CLN3-226ENST00000567160 ITSN1Q15811 1721 aa16.49■□□□□ 0.23
CLN3-226ENST00000567160 PARP4Q9UKK3 1724 aaKnown RBP16.48■□□□□ 0.23
CLN3-226ENST00000567160 PLSCR1O15162 318 aa16.48■□□□□ 0.23
CLN3-226ENST00000567160 HIRIP3Q9BW71 556 aaPredicted RBP16.48■□□□□ 0.23
CLN3-226ENST00000567160 MYOM1P52179 1685 aa16.48■□□□□ 0.23
CLN3-226ENST00000567160 PRR36Q9H6K5 1346 aa16.47■□□□□ 0.23
CLN3-226ENST00000567160 OVOS2A0A0G2JMS6 1433 aa16.47■□□□□ 0.23
CLN3-226ENST00000567160 OVOS2A0A0J9YW53 1432 aa16.47■□□□□ 0.23
CLN3-226ENST00000567160 OVOS2Q6IE36 1432 aa16.47■□□□□ 0.23
CLN3-226ENST00000567160 MPHOSPH9Q99550 1183 aa16.47■□□□□ 0.23
CLN3-226ENST00000567160 WASLO00401 505 aaPredicted RBP16.46■□□□□ 0.23
CLN3-226ENST00000567160 MINK1Q8N4C8 1332 aaPredicted RBP16.45■□□□□ 0.22
CLN3-226ENST00000567160 LARP1Q6PKG0 1096 aaKnown RBP16.45■□□□□ 0.22
CLN3-226ENST00000567160 BCL11BQ9C0K0 894 aaPredicted RBP16.45■□□□□ 0.22
CLN3-226ENST00000567160 SBF2Q86WG5 1849 aa16.45■□□□□ 0.22
CLN3-226ENST00000567160 ZBTB7AO95365 584 aa16.44■□□□□ 0.22
CLN3-226ENST00000567160 ANO8Q9HCE9 1232 aaPredicted RBP16.44■□□□□ 0.22
CLN3-226ENST00000567160 PTGER2P43116 358 aa16.43■□□□□ 0.22
CLN3-226ENST00000567160 TRAK1Q9UPV9 953 aa16.43■□□□□ 0.22
CLN3-226ENST00000567160 PEAK1Q9H792 1746 aa16.42■□□□□ 0.22
CLN3-226ENST00000567160 SYT17Q9BSW7 474 aa16.42■□□□□ 0.22
CLN3-226ENST00000567160 FHDC1Q9C0D6 1143 aaPredicted RBP16.42■□□□□ 0.22
CLN3-226ENST00000567160 LMO7Q8WWI1 1683 aa16.42■□□□□ 0.22
CLN3-226ENST00000567160 CPDO75976 1380 aa16.41■□□□□ 0.22
CLN3-226ENST00000567160 NUTM2GQ5VZR2 741 aa16.41■□□□□ 0.22
CLN3-226ENST00000567160 ATF5Q9Y2D1 282 aaPredicted RBP16.41■□□□□ 0.22
CLN3-226ENST00000567160 ADGRB1O14514 1584 aa16.4■□□□□ 0.22
CLN3-226ENST00000567160 GIGYF1O75420 1035 aaPredicted RBP16.4■□□□□ 0.22
CLN3-226ENST00000567160 STK32BQ9NY57 414 aa16.4■□□□□ 0.22
CLN3-226ENST00000567160 PDGFDQ9GZP0 370 aaPredicted RBP16.39■□□□□ 0.21
CLN3-226ENST00000567160 MTFR1LQ9H019 292 aa16.39■□□□□ 0.21
CLN3-226ENST00000567160 CRB1P82279 1406 aa16.38■□□□□ 0.21
CLN3-226ENST00000567160 NUDT16Q96DE0 195 aaKnown RBP16.38■□□□□ 0.21
CLN3-226ENST00000567160 LRRC37A3O60309 1634 aa16.37■□□□□ 0.21
CLN3-226ENST00000567160 COL5A2P05997 1499 aaPredicted RBP16.37■□□□□ 0.21
CLN3-226ENST00000567160 DDB1Q16531 1140 aa16.37■□□□□ 0.21
CLN3-226ENST00000567160 ABTB2Q8N961 1025 aa16.37■□□□□ 0.21
CLN3-226ENST00000567160 CCER1Q8TC90 406 aaPredicted RBP16.36■□□□□ 0.21
CLN3-226ENST00000567160 AKAP12Q02952 1782 aa16.36■□□□□ 0.21
CLN3-226ENST00000567160 SLC15A2Q16348 729 aa16.35■□□□□ 0.21
CLN3-226ENST00000567160 USP19O94966 1318 aa16.35■□□□□ 0.21
CLN3-226ENST00000567160 POLR3AO14802 1390 aaPredicted RBP16.35■□□□□ 0.21
CLN3-226ENST00000567160 NLRP13Q86W25 1043 aa16.34■□□□□ 0.21
CLN3-226ENST00000567160 PROM2Q8N271 834 aa16.34■□□□□ 0.21
CLN3-226ENST00000567160 ARXQ96QS3 562 aa16.34■□□□□ 0.21
CLN3-226ENST00000567160 MAP3K5Q99683 1374 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms