RNA–Protein interactions for RNA: ENST00000566029.5

CHD9-218, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 13,110 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-218ENST00000566029 PIBF1Q8WXW3 757 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 CHMP3Q9Y3E7 222 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 DDX49Q9Y6V7 483 aaKnown RBP3.56□□□□□ -1.84
CHD9-218ENST00000566029 CFAP43Q8NDM7 1665 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 YEATS2Q9ULM3 1422 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 CTIFO43310 598 aaKnown RBP3.55□□□□□ -1.84
CHD9-218ENST00000566029 RLBP1P12271 317 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 GOLGA6L22H0YM25 854 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 DNAJC2Q99543 621 aaKnown RBP3.55□□□□□ -1.84
CHD9-218ENST00000566029 CTNNA3Q9UI47 895 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 NRDCO43847 1150 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 TERF2Q15554 542 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 KIF2CQ99661 725 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 POLA1P09884 1462 aaPredicted RBP3.55□□□□□ -1.84
CHD9-218ENST00000566029 CFTRP13569 1480 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 SOX12O15370 315 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 MFAP1P55081 439 aaKnown RBP3.55□□□□□ -1.84
CHD9-218ENST00000566029 C17orf53Q8N3J3 647 aaPredicted RBP3.55□□□□□ -1.84
CHD9-218ENST00000566029 PHF23Q9BUL5 403 aaPredicted RBP3.55□□□□□ -1.84
CHD9-218ENST00000566029 ADAMTS8Q9UP79 889 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 NPHP1O15259 732 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 SRPK2P78362 688 aaKnown RBP3.55□□□□□ -1.84
CHD9-218ENST00000566029 KIF3AQ9Y496 699 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 TRIM63Q969Q1 353 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 CARD11Q9BXL7 1154 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 FEZ2Q9UHY8 353 aaPredicted RBP3.55□□□□□ -1.84
CHD9-218ENST00000566029 BCCIPQ9P287 314 aaKnown RBP eCLIP3.55□□□□□ -1.84
CHD9-218ENST00000566029 PYCARDQ9ULZ3 195 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 PKD2Q13563 968 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 WDR78Q5VTH9 848 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 COL17A1Q9UMD9 1497 aaPredicted RBP3.55□□□□□ -1.84
CHD9-218ENST00000566029 UVSSAQ2YD98 709 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 ZSCAN23Q3MJ62 389 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 TESK2Q96S53 571 aa3.55□□□□□ -1.84
CHD9-218ENST00000566029 HDAC1Q13547 482 aaPredicted RBP3.54□□□□□ -1.84
CHD9-218ENST00000566029 TPM3P06753 285 aa3.54□□□□□ -1.84
CHD9-218ENST00000566029 CC2D1BQ5T0F9 858 aaKnown RBP3.54□□□□□ -1.84
CHD9-218ENST00000566029 TIGD1Q96MW7 591 aa3.54□□□□□ -1.84
CHD9-218ENST00000566029 ERBB3P21860 1342 aa3.54□□□□□ -1.84
CHD9-218ENST00000566029 EHBP1L1Q8N3D4 1523 aa3.54□□□□□ -1.84
CHD9-218ENST00000566029 ST20-MTHFSA0A0A6YYL1 179 aa3.54□□□□□ -1.84
CHD9-218ENST00000566029 DISP3Q9P2K9 1392 aa3.54□□□□□ -1.84
CHD9-218ENST00000566029 ZRSR1Q15695 479 aaKnown RBP3.54□□□□□ -1.84
CHD9-218ENST00000566029 K7ELQ4 463 aaPredicted RBP3.54□□□□□ -1.84
CHD9-218ENST00000566029 SLC52A1Q9NWF4 448 aa3.54□□□□□ -1.84
CHD9-218ENST00000566029 RBM27Q9P2N5 1060 aaKnown RBP3.54□□□□□ -1.84
CHD9-218ENST00000566029 PLB1Q6P1J6 1458 aa3.54□□□□□ -1.84
CHD9-218ENST00000566029 IGSF3O75054 1194 aa3.54□□□□□ -1.84
CHD9-218ENST00000566029 CD2BP2O95400 341 aaKnown RBP3.54□□□□□ -1.84
CHD9-218ENST00000566029 PRIM1P49642 420 aaKnown RBP3.54□□□□□ -1.84
CHD9-218ENST00000566029 RARSP54136 660 aaKnown RBP3.54□□□□□ -1.84
CHD9-218ENST00000566029 KANK1Q14678 1352 aa3.54□□□□□ -1.84
CHD9-218ENST00000566029 APAF1O14727 1248 aa3.54□□□□□ -1.84
CHD9-218ENST00000566029 LRSAM1Q6UWE0 723 aa3.54□□□□□ -1.84
CHD9-218ENST00000566029 GEMIN8Q9NWZ8 242 aaKnown RBP3.54□□□□□ -1.84
CHD9-218ENST00000566029 TMEM63CQ9P1W3 806 aa3.54□□□□□ -1.84
CHD9-218ENST00000566029 KDM6BO15054 1643 aa3.54□□□□□ -1.84
CHD9-218ENST00000566029 FKBP5Q13451 457 aaPredicted RBP3.54□□□□□ -1.84
CHD9-218ENST00000566029 SUPT6HQ7KZ85 1726 aaKnown RBP3.53□□□□□ -1.84
CHD9-218ENST00000566029 U2AF2P26368 475 aaKnown RBP eCLIP3.53□□□□□ -1.843e-6■■■□□ 17
CHD9-218ENST00000566029 CALCOCO1Q9P1Z2 691 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 DDX41Q9UJV9 622 aaKnown RBP3.53□□□□□ -1.84
CHD9-218ENST00000566029 ERBINQ96RT1 1412 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP3.53□□□□□ -1.84
CHD9-218ENST00000566029 RBM42Q9BTD8 480 aaKnown RBP3.53□□□□□ -1.84
CHD9-218ENST00000566029 RIOK3O14730 519 aaKnown RBP3.53□□□□□ -1.84
CHD9-218ENST00000566029 GUCY2CP25092 1073 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 FBLN2P98095 1184 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 CCDC66A2RUB6 948 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 TSPY26PQ9H489 355 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 HECW1Q76N89 1606 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 SPDYE4A6NLX3 237 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 SMTNL1A8MU46 457 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 SLFNL1Q499Z3 407 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 ZNF397Q8NF99 534 aaPredicted RBP3.53□□□□□ -1.84
CHD9-218ENST00000566029 KIAA1524Q8TCG1 905 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 GOLGA6L6A8MZA4 724 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 TSGA10IPQ3SY00 556 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 LMOD2Q6P5Q4 547 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 WDR43Q15061 677 aaKnown RBP eCLIP3.53□□□□□ -1.84
CHD9-218ENST00000566029 CCDC34Q96HJ3 373 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 TMX4Q9H1E5 349 aaPredicted RBP3.53□□□□□ -1.84
CHD9-218ENST00000566029 KCNF1Q9H3M0 494 aa3.53□□□□□ -1.84
CHD9-218ENST00000566029 MAGI3Q5TCQ9 1506 aa3.53□□□□□ -1.85
CHD9-218ENST00000566029 CLGNO14967 610 aa3.53□□□□□ -1.85
CHD9-218ENST00000566029 NCAPGQ9BPX3 1015 aa3.53□□□□□ -1.85
CHD9-218ENST00000566029 PSMA4P25789 261 aaKnown RBP3.52□□□□□ -1.85
CHD9-218ENST00000566029 NOP2P46087 812 aaKnown RBP3.52□□□□□ -1.85
CHD9-218ENST00000566029 ZNF622Q969S3 477 aaKnown RBP eCLIP3.52□□□□□ -1.856e-7■■■□□ 18.6
CHD9-218ENST00000566029 ZDHHC9Q9Y397 364 aa3.52□□□□□ -1.85
CHD9-218ENST00000566029 SAMD1Q6SPF0 538 aaPredicted RBP3.52□□□□□ -1.85
CHD9-218ENST00000566029 CNPY4Q8N129 248 aa3.52□□□□□ -1.85
CHD9-218ENST00000566029 SERPINA10Q9UK55 444 aa3.52□□□□□ -1.85
CHD9-218ENST00000566029 TRIM6-TRIM34B2RNG4 842 aa3.52□□□□□ -1.85
CHD9-218ENST00000566029 TRERF1Q96PN7 1200 aa3.52□□□□□ -1.85
CHD9-218ENST00000566029 TRIM34Q9BYJ4 488 aa3.52□□□□□ -1.85
CHD9-218ENST00000566029 ATG3Q9NT62 314 aa3.52□□□□□ -1.85
CHD9-218ENST00000566029 ANKRD50Q9ULJ7 1429 aa3.52□□□□□ -1.85
CHD9-218ENST00000566029 NKTRP30414 1462 aaKnown RBP3.52□□□□□ -1.85
CHD9-218ENST00000566029 GRIN2AQ12879 1464 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms