RNA–Protein interactions for RNA: ENST00000564060.5

CMTM3-207, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2 BASIC

Gene CMTM3, Length 824 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-207ENST00000564060 USP21Q9UK80 565 aa28.15■■■□□ 2.1
CMTM3-207ENST00000564060 CDK12Q9NYV4 1490 aaPredicted RBP28.15■■■□□ 2.1
CMTM3-207ENST00000564060 NWD2Q9ULI1 1742 aa28.13■■■□□ 2.09
CMTM3-207ENST00000564060 QTRT2Q9H974 415 aaKnown RBP28.12■■■□□ 2.09
CMTM3-207ENST00000564060 BRD4O60885 1362 aaPredicted RBP28.11■■■□□ 2.09
CMTM3-207ENST00000564060 PLCH1Q4KWH8 1693 aa28.11■■■□□ 2.09
CMTM3-207ENST00000564060 TRPC5Q9UL62 973 aaPredicted RBP28.11■■■□□ 2.09
CMTM3-207ENST00000564060 ATAD2Q6PL18 1390 aa28.11■■■□□ 2.09
CMTM3-207ENST00000564060 RBM6P78332 1123 aaKnown RBP28.1■■■□□ 2.09
CMTM3-207ENST00000564060 CABLES1Q8TDN4 633 aa28.1■■■□□ 2.09
CMTM3-207ENST00000564060 PHRF1Q9P1Y6 1649 aaKnown RBP28.09■■■□□ 2.09
CMTM3-207ENST00000564060 AKAP12Q02952 1782 aa28.09■■■□□ 2.09
CMTM3-207ENST00000564060 CCER1Q8TC90 406 aaPredicted RBP28.08■■■□□ 2.09
CMTM3-207ENST00000564060 SLIT2O94813 1529 aa28.08■■■□□ 2.08
CMTM3-207ENST00000564060 PLEKHG5O94827 1062 aa28.07■■■□□ 2.08
CMTM3-207ENST00000564060 SLC24A1O60721 1099 aa28.06■■■□□ 2.08
CMTM3-207ENST00000564060 CABP1Q9NZU7 370 aa28.06■■■□□ 2.08
CMTM3-207ENST00000564060 ATRNO75882 1429 aa28.06■■■□□ 2.08
CMTM3-207ENST00000564060 BCL9LQ86UU0 1499 aa28.06■■■□□ 2.08
CMTM3-207ENST00000564060 COL14A1Q05707 1796 aaKnown RBP28.06■■■□□ 2.08
CMTM3-207ENST00000564060 USP6P35125 1406 aa28.04■■■□□ 2.08
CMTM3-207ENST00000564060 UNC5CLQ8IV45 518 aa28.01■■■□□ 2.07
CMTM3-207ENST00000564060 ABTB2Q8N961 1025 aa28■■■□□ 2.07
CMTM3-207ENST00000564060 ZNF692Q9BU19 519 aaPredicted RBP28■■■□□ 2.07
CMTM3-207ENST00000564060 MON2Q7Z3U7 1717 aa28■■■□□ 2.07
CMTM3-207ENST00000564060 NRAPQ86VF7 1730 aa27.98■■■□□ 2.07
CMTM3-207ENST00000564060 RGS12O14924 1447 aa27.98■■■□□ 2.07
CMTM3-207ENST00000564060 USP47Q96K76 1375 aa27.98■■■□□ 2.07
CMTM3-207ENST00000564060 PUS7Q96PZ0 661 aaKnown RBP27.97■■■□□ 2.07
CMTM3-207ENST00000564060 NRKQ7Z2Y5 1582 aa27.97■■■□□ 2.07
CMTM3-207ENST00000564060 ST20-MTHFSA0A0A6YYL1 179 aa27.96■■■□□ 2.07
CMTM3-207ENST00000564060 NLRP13Q86W25 1043 aa27.96■■■□□ 2.07
CMTM3-207ENST00000564060 PIK3C2AO00443 1686 aa27.94■■■□□ 2.06
CMTM3-207ENST00000564060 CPSF1Q10570 1443 aaKnown RBP27.94■■■□□ 2.06
CMTM3-207ENST00000564060 NUTM2GQ5VZR2 741 aa27.94■■■□□ 2.06
CMTM3-207ENST00000564060 GJD4Q96KN9 370 aaPredicted RBP27.94■■■□□ 2.06
CMTM3-207ENST00000564060 SSH2Q76I76 1423 aa27.93■■■□□ 2.06
CMTM3-207ENST00000564060 FAM83GA6ND36 823 aa27.93■■■□□ 2.06
CMTM3-207ENST00000564060 PRDM11Q9NQV5 511 aa27.93■■■□□ 2.06
CMTM3-207ENST00000564060 USP19O94966 1318 aa27.92■■■□□ 2.06
CMTM3-207ENST00000564060 TESK2Q96S53 571 aa27.92■■■□□ 2.06
CMTM3-207ENST00000564060 GLI3P10071 1580 aa27.91■■■□□ 2.06
CMTM3-207ENST00000564060 KTN1Q86UP2 1357 aaKnown RBP27.91■■■□□ 2.06
CMTM3-207ENST00000564060 NINLQ9Y2I6 1382 aa27.91■■■□□ 2.06
CMTM3-207ENST00000564060 TTC21AQ8NDW8 1320 aa27.91■■■□□ 2.06
CMTM3-207ENST00000564060 VPS72Q15906 364 aa27.9■■■□□ 2.06
CMTM3-207ENST00000564060 KIAA0232Q92628 1395 aa27.89■■■□□ 2.06
CMTM3-207ENST00000564060 BTG4Q9NY30 223 aa27.89■■■□□ 2.06
CMTM3-207ENST00000564060 TMC1Q8TDI8 760 aa27.88■■■□□ 2.05
CMTM3-207ENST00000564060 SLIT3O75094 1523 aa27.87■■■□□ 2.05
CMTM3-207ENST00000564060 NLRP6P59044 892 aa27.87■■■□□ 2.05
CMTM3-207ENST00000564060 HDGFL2Q7Z4V5 671 aaPredicted RBP27.87■■■□□ 2.05
CMTM3-207ENST00000564060 TTC21BQ7Z4L5 1316 aa27.87■■■□□ 2.05
CMTM3-207ENST00000564060 CPDO75976 1380 aa27.86■■■□□ 2.05
CMTM3-207ENST00000564060 TMF1P82094 1093 aa27.86■■■□□ 2.05
CMTM3-207ENST00000564060 TERF2IPQ9NYB0 399 aa27.86■■■□□ 2.05
CMTM3-207ENST00000564060 CCDC9Q9Y3X0 531 aaKnown RBP27.86■■■□□ 2.05
CMTM3-207ENST00000564060 ZC3H6P61129 1189 aaKnown RBP27.85■■■□□ 2.05
CMTM3-207ENST00000564060 CD163L1Q9NR16 1453 aa27.84■■■□□ 2.05
CMTM3-207ENST00000564060 USP54Q70EL1 1684 aa27.84■■■□□ 2.05
CMTM3-207ENST00000564060 GCP02774 474 aa27.83■■■□□ 2.05
CMTM3-207ENST00000564060 CDCA8Q53HL2 280 aa27.83■■■□□ 2.05
CMTM3-207ENST00000564060 LMO7Q8WWI1 1683 aa27.82■■■□□ 2.04
CMTM3-207ENST00000564060 SLC12A5Q9H2X9 1139 aa27.81■■■□□ 2.04
CMTM3-207ENST00000564060 EDC4Q6P2E9 1401 aaKnown RBP27.81■■■□□ 2.04
CMTM3-207ENST00000564060 BRWD3Q6RI45 1802 aa27.81■■■□□ 2.04
CMTM3-207ENST00000564060 CHRNA2Q15822 529 aa27.8■■■□□ 2.04
CMTM3-207ENST00000564060 A0A1W2PP64 1363 aa27.79■■■□□ 2.04
CMTM3-207ENST00000564060 KCNH5Q8NCM2 988 aa27.79■■■□□ 2.04
CMTM3-207ENST00000564060 UPF1Q92900 1129 aaKnown RBP eCLIP27.76■■■□□ 2.034e-8■■■■□ 24.2
CMTM3-207ENST00000564060 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.75■■■□□ 2.03
CMTM3-207ENST00000564060 CAMTA1Q9Y6Y1 1673 aa27.75■■■□□ 2.03
CMTM3-207ENST00000564060 USP31Q70CQ4 1352 aa27.74■■■□□ 2.03
CMTM3-207ENST00000564060 SPATA31A5Q5VU36 1347 aa27.74■■■□□ 2.03
CMTM3-207ENST00000564060 SPATA31A7Q8IWB4 1347 aa27.74■■■□□ 2.03
CMTM3-207ENST00000564060 ONECUT3O60422 494 aaPredicted RBP27.74■■■□□ 2.03
CMTM3-207ENST00000564060 EVA1CP58658 441 aa27.73■■■□□ 2.03
CMTM3-207ENST00000564060 STRN4Q9NRL3 753 aa27.73■■■□□ 2.03
CMTM3-207ENST00000564060 ANKRD36BQ8N2N9 1353 aa27.73■■■□□ 2.03
CMTM3-207ENST00000564060 SEPT12Q8IYM1 358 aa27.72■■■□□ 2.03
CMTM3-207ENST00000564060 AATKQ6ZMQ8 1374 aa27.72■■■□□ 2.03
CMTM3-207ENST00000564060 COL18A1P39060 1754 aa27.71■■■□□ 2.03
CMTM3-207ENST00000564060 NFAT5O94916 1531 aa27.71■■■□□ 2.03
CMTM3-207ENST00000564060 A0A0G2JS52 829 aa27.7■■■□□ 2.02
CMTM3-207ENST00000564060 EIF4G2P78344 907 aaKnown RBP eCLIP27.7■■■□□ 2.02
CMTM3-207ENST00000564060 MYT1Q01538 1121 aa27.7■■■□□ 2.02
CMTM3-207ENST00000564060 MYOM1P52179 1685 aa27.7■■■□□ 2.02
CMTM3-207ENST00000564060 ABCC6O95255 1503 aa27.7■■■□□ 2.02
CMTM3-207ENST00000564060 LTN1O94822 1766 aa27.7■■■□□ 2.02
CMTM3-207ENST00000564060 COL5A2P05997 1499 aaPredicted RBP27.7■■■□□ 2.02
CMTM3-207ENST00000564060 THSD7AQ9UPZ6 1657 aa27.69■■■□□ 2.02
CMTM3-207ENST00000564060 ZBTB7CA1YPR0 619 aa27.69■■■□□ 2.02
CMTM3-207ENST00000564060 SPATA31A1Q5TZJ5 1347 aa27.68■■■□□ 2.02
CMTM3-207ENST00000564060 RGPD5Q99666 1765 aa27.68■■■□□ 2.02
CMTM3-207ENST00000564060 FAM98CQ17RN3 349 aaKnown RBP27.68■■■□□ 2.02
CMTM3-207ENST00000564060 NME9Q86XW9 330 aa27.67■■■□□ 2.02
CMTM3-207ENST00000564060 ARHGEF25Q86VW2 580 aa27.65■■■□□ 2.02
CMTM3-207ENST00000564060 OVOS2A0A0J9YW53 1432 aa27.65■■■□□ 2.02
CMTM3-207ENST00000564060 OVOS2Q6IE36 1432 aa27.65■■■□□ 2.02
CMTM3-207ENST00000564060 KIF20BQ96Q89 1820 aa27.64■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms