RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 GLI3P10071 1580 aa25.39■■□□□ 1.65
NME3-205ENST00000563854 NWD2Q9ULI1 1742 aa25.37■■□□□ 1.65
NME3-205ENST00000563854 ACEP12821 1306 aa25.37■■□□□ 1.65
NME3-205ENST00000563854 ROCK2O75116 1388 aaKnown RBP25.36■■□□□ 1.65
NME3-205ENST00000563854 FAM83GA6ND36 823 aa25.36■■□□□ 1.65
NME3-205ENST00000563854 CCDC61Q9Y6R9 512 aa25.36■■□□□ 1.65
NME3-205ENST00000563854 CABP2Q9NPB3 220 aa25.35■■□□□ 1.65
NME3-205ENST00000563854 NUTM2GQ5VZR2 741 aa25.34■■□□□ 1.65
NME3-205ENST00000563854 CRYBG1Q9Y4K1 1723 aa25.34■■□□□ 1.65
NME3-205ENST00000563854 POLR3AO14802 1390 aaPredicted RBP25.32■■□□□ 1.64
NME3-205ENST00000563854 PPIP5K1Q6PFW1 1433 aa25.32■■□□□ 1.64
NME3-205ENST00000563854 COL14A1Q05707 1796 aaKnown RBP25.32■■□□□ 1.64
NME3-205ENST00000563854 VPS72Q15906 364 aa25.32■■□□□ 1.64
NME3-205ENST00000563854 NBPF8Q3BBV2 869 aa25.31■■□□□ 1.64
NME3-205ENST00000563854 BTG4Q9NY30 223 aa25.31■■□□□ 1.64
NME3-205ENST00000563854 NRAPQ86VF7 1730 aa25.3■■□□□ 1.64
NME3-205ENST00000563854 PLEKHG3A1L390 1219 aa25.3■■□□□ 1.64
NME3-205ENST00000563854 PHRF1Q9P1Y6 1649 aaKnown RBP25.3■■□□□ 1.64
NME3-205ENST00000563854 A0A0G2JS52 829 aa25.29■■□□□ 1.64
NME3-205ENST00000563854 MYT1Q01538 1121 aa25.29■■□□□ 1.64
NME3-205ENST00000563854 PRDM11Q9NQV5 511 aa25.29■■□□□ 1.64
NME3-205ENST00000563854 TRIM26Q12899 539 aaPredicted RBP25.27■■□□□ 1.64
NME3-205ENST00000563854 TONSLQ96HA7 1378 aa25.27■■□□□ 1.64
NME3-205ENST00000563854 SEPT12Q8IYM1 358 aa25.26■■□□□ 1.63
NME3-205ENST00000563854 ABTB2Q8N961 1025 aa25.25■■□□□ 1.63
NME3-205ENST00000563854 EVC2Q86UK5 1308 aa25.25■■□□□ 1.63
NME3-205ENST00000563854 KIAA0232Q92628 1395 aa25.25■■□□□ 1.63
NME3-205ENST00000563854 BRWD3Q6RI45 1802 aa25.25■■□□□ 1.63
NME3-205ENST00000563854 ZC3H6P61129 1189 aaKnown RBP25.24■■□□□ 1.63
NME3-205ENST00000563854 CHRNA2Q15822 529 aa25.24■■□□□ 1.63
NME3-205ENST00000563854 CABP1Q9NZU7 370 aa25.23■■□□□ 1.63
NME3-205ENST00000563854 EP400Q96L91 3159 aa25.21■■□□□ 1.63
NME3-205ENST00000563854 FAM98CQ17RN3 349 aaKnown RBP25.21■■□□□ 1.63
NME3-205ENST00000563854 NRKQ7Z2Y5 1582 aa25.21■■□□□ 1.63
NME3-205ENST00000563854 CARD11Q9BXL7 1154 aa25.19■■□□□ 1.62
NME3-205ENST00000563854 STRN4Q9NRL3 753 aa25.19■■□□□ 1.62
NME3-205ENST00000563854 USP6P35125 1406 aa25.18■■□□□ 1.62
NME3-205ENST00000563854 KRT27Q7Z3Y8 459 aa25.16■■□□□ 1.62
NME3-205ENST00000563854 NLRP13Q86W25 1043 aa25.16■■□□□ 1.62
NME3-205ENST00000563854 SPATA31A5Q5VU36 1347 aa25.15■■□□□ 1.62
NME3-205ENST00000563854 SPATA31A7Q8IWB4 1347 aa25.15■■□□□ 1.62
NME3-205ENST00000563854 ONECUT3O60422 494 aaPredicted RBP25.15■■□□□ 1.62
NME3-205ENST00000563854 USP19O94966 1318 aa25.14■■□□□ 1.62
NME3-205ENST00000563854 ZBTB7CA1YPR0 619 aa25.14■■□□□ 1.62
NME3-205ENST00000563854 CCDC125Q86Z20 511 aa25.14■■□□□ 1.62
NME3-205ENST00000563854 BRD4O60885 1362 aaPredicted RBP25.13■■□□□ 1.61
NME3-205ENST00000563854 BLMP54132 1417 aaPredicted RBP25.12■■□□□ 1.61
NME3-205ENST00000563854 EVA1CP58658 441 aa25.12■■□□□ 1.61
NME3-205ENST00000563854 NLRP6P59044 892 aa25.11■■□□□ 1.61
NME3-205ENST00000563854 USP35Q9P2H5 1018 aa25.11■■□□□ 1.61
NME3-205ENST00000563854 GCP02774 474 aa25.1■■□□□ 1.61
NME3-205ENST00000563854 SF3B2Q13435 895 aaKnown RBP25.1■■□□□ 1.61
NME3-205ENST00000563854 PIK3C2AO00443 1686 aa25.09■■□□□ 1.61
NME3-205ENST00000563854 SPATA31A1Q5TZJ5 1347 aa25.09■■□□□ 1.61
NME3-205ENST00000563854 CPDO75976 1380 aa25.08■■□□□ 1.61
NME3-205ENST00000563854 SSH2Q76I76 1423 aa25.08■■□□□ 1.61
NME3-205ENST00000563854 AKAP12Q02952 1782 aa25.08■■□□□ 1.6
NME3-205ENST00000563854 THSD7AQ9UPZ6 1657 aa25.07■■□□□ 1.6
NME3-205ENST00000563854 CAMTA1Q9Y6Y1 1673 aa25.07■■□□□ 1.6
NME3-205ENST00000563854 FAM182BQ5T319 152 aa25.07■■□□□ 1.6
NME3-205ENST00000563854 LMO7Q8WWI1 1683 aa25.07■■□□□ 1.6
NME3-205ENST00000563854 SBNO2Q9Y2G9 1366 aa25.06■■□□□ 1.6
NME3-205ENST00000563854 DEFB132Q7Z7B7 95 aa25.06■■□□□ 1.6
NME3-205ENST00000563854 SLIT3O75094 1523 aa25.05■■□□□ 1.6
NME3-205ENST00000563854 TTC21BQ7Z4L5 1316 aa25.05■■□□□ 1.6
NME3-205ENST00000563854 KTN1Q86UP2 1357 aaKnown RBP25.05■■□□□ 1.6
NME3-205ENST00000563854 SOX12O15370 315 aa25.04■■□□□ 1.6
NME3-205ENST00000563854 LARP1Q6PKG0 1096 aaKnown RBP25.04■■□□□ 1.6
NME3-205ENST00000563854 ZNF692Q9BU19 519 aaPredicted RBP25.04■■□□□ 1.6
NME3-205ENST00000563854 TMC1Q8TDI8 760 aa25.03■■□□□ 1.6
NME3-205ENST00000563854 ZRANB1Q9UGI0 708 aa25.03■■□□□ 1.6
NME3-205ENST00000563854 CPSF1Q10570 1443 aaKnown RBP25.01■■□□□ 1.59
NME3-205ENST00000563854 COL5A2P05997 1499 aaPredicted RBP25.01■■□□□ 1.59
NME3-205ENST00000563854 MON2Q7Z3U7 1717 aa24.99■■□□□ 1.59
NME3-205ENST00000563854 TTC21AQ8NDW8 1320 aa24.99■■□□□ 1.59
NME3-205ENST00000563854 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.98■■□□□ 1.59
NME3-205ENST00000563854 TCP11L2Q8N4U5 519 aa24.97■■□□□ 1.59
NME3-205ENST00000563854 BAG6P46379 1132 aa24.96■■□□□ 1.59
NME3-205ENST00000563854 RGPD1P0DJD0 1748 aa24.95■■□□□ 1.59
NME3-205ENST00000563854 AATKQ6ZMQ8 1374 aa24.95■■□□□ 1.59
NME3-205ENST00000563854 BARGINQ6ZT62 677 aa24.95■■□□□ 1.58
NME3-205ENST00000563854 HDGFL2Q7Z4V5 671 aaPredicted RBP24.95■■□□□ 1.58
NME3-205ENST00000563854 ST20-MTHFSA0A0A6YYL1 179 aa24.94■■□□□ 1.58
NME3-205ENST00000563854 PDE3BQ13370 1112 aa24.94■■□□□ 1.58
NME3-205ENST00000563854 KCNH5Q8NCM2 988 aa24.94■■□□□ 1.58
NME3-205ENST00000563854 PCGF6Q9BYE7 350 aa24.94■■□□□ 1.58
NME3-205ENST00000563854 SLC12A5Q9H2X9 1139 aa24.94■■□□□ 1.58
NME3-205ENST00000563854 SRCAPQ6ZRS2 3230 aa24.94■■□□□ 1.58
NME3-205ENST00000563854 CD163L1Q9NR16 1453 aa24.94■■□□□ 1.58
NME3-205ENST00000563854 CRB1P82279 1406 aa24.94■■□□□ 1.58
NME3-205ENST00000563854 COL18A1P39060 1754 aa24.91■■□□□ 1.58
NME3-205ENST00000563854 TOM1L2Q6ZVM7 507 aa24.91■■□□□ 1.58
NME3-205ENST00000563854 NME9Q86XW9 330 aa24.91■■□□□ 1.58
NME3-205ENST00000563854 THRAP3Q9Y2W1 955 aaKnown RBP24.91■■□□□ 1.58
NME3-205ENST00000563854 ARHGEF25Q86VW2 580 aa24.9■■□□□ 1.58
NME3-205ENST00000563854 NFAT5O94916 1531 aa24.9■■□□□ 1.58
NME3-205ENST00000563854 TNS1Q9HBL0 1735 aaKnown RBP24.89■■□□□ 1.58
NME3-205ENST00000563854 TRIM37O94972 964 aa24.89■■□□□ 1.58
NME3-205ENST00000563854 FAM196AQ6ZSG2 479 aa24.89■■□□□ 1.58
NME3-205ENST00000563854 TESK2Q96S53 571 aa24.89■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms