RNA–Protein interactions for RNA: ENST00000563836.1

SMG1-209, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5

Gene SMG1, Length 565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-209ENST00000563836 CARMIL2Q6F5E8 1435 aa12.62□□□□□ -0.39
SMG1-209ENST00000563836 ARHGAP35Q9NRY4 1499 aa12.61□□□□□ -0.39
SMG1-209ENST00000563836 TUSC1Q2TAM9 212 aa12.61□□□□□ -0.39
SMG1-209ENST00000563836 FMN1Q68DA7 1419 aa12.61□□□□□ -0.39
SMG1-209ENST00000563836 A0A0G2JS52 829 aa12.6□□□□□ -0.39
SMG1-209ENST00000563836 SKIV2LQ15477 1246 aaKnown RBP12.6□□□□□ -0.39
SMG1-209ENST00000563836 LIMD1Q9UGP4 676 aa12.6□□□□□ -0.39
SMG1-209ENST00000563836 CLK2P49760 499 aaKnown RBP12.59□□□□□ -0.39
SMG1-209ENST00000563836 GOPCQ9HD26 462 aa12.59□□□□□ -0.39
SMG1-209ENST00000563836 NUP160Q12769 1436 aa12.59□□□□□ -0.39
SMG1-209ENST00000563836 CEP170Q5SW79 1584 aa12.58□□□□□ -0.4
SMG1-209ENST00000563836 FAM160A2Q8N612 972 aaPredicted RBP12.58□□□□□ -0.4
SMG1-209ENST00000563836 SYMPKQ92797 1274 aaKnown RBP12.58□□□□□ -0.4
SMG1-209ENST00000563836 ATP1B4Q9UN42 357 aaPredicted RBP12.58□□□□□ -0.4
SMG1-209ENST00000563836 PCDHB15Q9Y5E8 787 aa12.58□□□□□ -0.4
SMG1-209ENST00000563836 UGGT2Q9NYU1 1516 aa12.57□□□□□ -0.4
SMG1-209ENST00000563836 SAMD9Q5K651 1589 aa12.57□□□□□ -0.4
SMG1-209ENST00000563836 MSS51Q4VC12 460 aa12.57□□□□□ -0.4
SMG1-209ENST00000563836 USB1Q9BQ65 265 aaKnown RBP12.57□□□□□ -0.4
SMG1-209ENST00000563836 POLR3EQ9NVU0 708 aa12.57□□□□□ -0.4
SMG1-209ENST00000563836 ARAP1Q96P48 1450 aa12.57□□□□□ -0.4
SMG1-209ENST00000563836 PRPF38BQ5VTL8 546 aaKnown RBP12.56□□□□□ -0.4
SMG1-209ENST00000563836 PPP1R18Q6NYC8 613 aa12.56□□□□□ -0.4
SMG1-209ENST00000563836 RETREG3Q86VR2 466 aa12.56□□□□□ -0.4
SMG1-209ENST00000563836 SLC6A16Q9GZN6 736 aa12.56□□□□□ -0.4
SMG1-209ENST00000563836 C6orf229H3BNL8 230 aa12.55□□□□□ -0.4
SMG1-209ENST00000563836 MTMR2Q13614 643 aa12.55□□□□□ -0.4
SMG1-209ENST00000563836 FHOD3Q2V2M9 1422 aa12.54□□□□□ -0.4
SMG1-209ENST00000563836 SPDYE5A6NIY4 337 aa12.54□□□□□ -0.4
SMG1-209ENST00000563836 S1PR4O95977 384 aa12.54□□□□□ -0.4
SMG1-209ENST00000563836 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.54□□□□□ -0.4
SMG1-209ENST00000563836 HRCP23327 699 aa12.53□□□□□ -0.4
SMG1-209ENST00000563836 GGCXP38435 758 aa12.53□□□□□ -0.4
SMG1-209ENST00000563836 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.53□□□□□ -0.4
SMG1-209ENST00000563836 ZBTB3Q9H5J0 574 aa12.53□□□□□ -0.4
SMG1-209ENST00000563836 KIAA0556O60303 1618 aa12.52□□□□□ -0.4
SMG1-209ENST00000563836 LILRB3O75022 631 aa12.52□□□□□ -0.41
SMG1-209ENST00000563836 QPCTQ16769 361 aa12.52□□□□□ -0.41
SMG1-209ENST00000563836 CSPP1Q1MSJ5 1256 aa12.52□□□□□ -0.41
SMG1-209ENST00000563836 PROCA1Q8NCQ7 364 aaPredicted RBP12.51□□□□□ -0.41
SMG1-209ENST00000563836 PRDM9Q9NQV7 894 aa12.51□□□□□ -0.41
SMG1-209ENST00000563836 RNF223E7ERA6 249 aa12.5□□□□□ -0.41
SMG1-209ENST00000563836 MMP16P51512 607 aa12.5□□□□□ -0.41
SMG1-209ENST00000563836 CABLES1Q8TDN4 633 aa12.5□□□□□ -0.41
SMG1-209ENST00000563836 FYCO1Q9BQS8 1478 aa12.5□□□□□ -0.41
SMG1-209ENST00000563836 TTBK1Q5TCY1 1321 aaPredicted RBP12.49□□□□□ -0.41
SMG1-209ENST00000563836 HECW1Q76N89 1606 aa12.48□□□□□ -0.41
SMG1-209ENST00000563836 CASKIN1Q8WXD9 1431 aa12.48□□□□□ -0.41
SMG1-209ENST00000563836 DXOO77932 396 aaKnown RBP12.48□□□□□ -0.41
SMG1-209ENST00000563836 TRIM26Q12899 539 aaPredicted RBP12.48□□□□□ -0.41
SMG1-209ENST00000563836 PRR7Q8TB68 274 aa12.48□□□□□ -0.41
SMG1-209ENST00000563836 PRG4Q92954 1404 aaPredicted RBP12.47□□□□□ -0.41
SMG1-209ENST00000563836 ANKLE1Q8NAG6 615 aa12.47□□□□□ -0.41
SMG1-209ENST00000563836 PCMTD1Q96MG8 357 aaPredicted RBP12.47□□□□□ -0.41
SMG1-209ENST00000563836 PCF11O94913 1555 aaKnown RBP12.47□□□□□ -0.41
SMG1-209ENST00000563836 NUTM2BA6NNL0 878 aaPredicted RBP12.46□□□□□ -0.41
SMG1-209ENST00000563836 NUTM2EB1AL46 878 aaPredicted RBP12.46□□□□□ -0.41
SMG1-209ENST00000563836 CFAP99D6REC4 459 aa12.46□□□□□ -0.41
SMG1-209ENST00000563836 PPEF1O14829 653 aaPredicted RBP12.46□□□□□ -0.41
SMG1-209ENST00000563836 JUNDP17535 347 aa12.46□□□□□ -0.41
SMG1-209ENST00000563836 NUTM2DQ5VT03 806 aaPredicted RBP12.46□□□□□ -0.41
SMG1-209ENST00000563836 PPP2R2DQ66LE6 453 aa12.46□□□□□ -0.41
SMG1-209ENST00000563836 DESI1Q6ICB0 168 aa12.46□□□□□ -0.41
SMG1-209ENST00000563836 NUTM2AQ8IVF1 878 aaPredicted RBP12.46□□□□□ -0.41
SMG1-209ENST00000563836 MAP3K1Q13233 1512 aa12.46□□□□□ -0.42
SMG1-209ENST00000563836 DISP1Q96F81 1524 aa12.46□□□□□ -0.42
SMG1-209ENST00000563836 CCDC18Q5T9S5 1454 aa12.46□□□□□ -0.42
SMG1-209ENST00000563836 RTL5Q5HYW3 569 aaPredicted RBP12.45□□□□□ -0.42
SMG1-209ENST00000563836 FBXO31Q5XUX0 539 aaPredicted RBP12.45□□□□□ -0.42
SMG1-209ENST00000563836 CDK11AQ9UQ88 783 aaPredicted RBP12.45□□□□□ -0.42
SMG1-209ENST00000563836 SHROOM2Q13796 1616 aa12.44□□□□□ -0.42
SMG1-209ENST00000563836 CLASP1Q7Z460 1538 aa12.44□□□□□ -0.42
SMG1-209ENST00000563836 PPARGC1BQ86YN6 1023 aaKnown RBP12.44□□□□□ -0.42
SMG1-209ENST00000563836 RGS20O76081 388 aa12.43□□□□□ -0.42
SMG1-209ENST00000563836 TIAM1Q13009 1591 aa12.43□□□□□ -0.42
SMG1-209ENST00000563836 CFAP43Q8NDM7 1665 aa12.42□□□□□ -0.42
SMG1-209ENST00000563836 RAPGEF6Q8TEU7 1601 aa12.42□□□□□ -0.42
SMG1-209ENST00000563836 FCF1Q9Y324 198 aaKnown RBP12.42□□□□□ -0.42
SMG1-209ENST00000563836 PTPRGP23470 1445 aa12.42□□□□□ -0.42
SMG1-209ENST00000563836 MTUS2Q5JR59 1369 aa12.4□□□□□ -0.42
SMG1-209ENST00000563836 PLA2G2CQ5R387 149 aa12.39□□□□□ -0.43
SMG1-209ENST00000563836 PTPRNQ16849 979 aa12.38□□□□□ -0.43
SMG1-209ENST00000563836 PCGF6Q9BYE7 350 aa12.38□□□□□ -0.43
SMG1-209ENST00000563836 LYPD8Q6UX82 237 aa12.37□□□□□ -0.43
SMG1-209ENST00000563836 RFC5P40937 340 aa12.36□□□□□ -0.43
SMG1-209ENST00000563836 TMEM132AQ24JP5 1023 aa12.36□□□□□ -0.43
SMG1-209ENST00000563836 HELBQ8NG08 1087 aaPredicted RBP12.36□□□□□ -0.43
SMG1-209ENST00000563836 EMID1Q96A84 441 aaPredicted RBP12.36□□□□□ -0.43
SMG1-209ENST00000563836 NUDT12Q9BQG2 462 aa12.36□□□□□ -0.43
SMG1-209ENST00000563836 LRRC9Q6ZRR7 1453 aa12.35□□□□□ -0.43
SMG1-209ENST00000563836 EPRSP07814 1512 aaKnown RBP12.35□□□□□ -0.43
SMG1-209ENST00000563836 SUPT6HQ7KZ85 1726 aaKnown RBP12.34□□□□□ -0.43
SMG1-209ENST00000563836 EHBP1L1Q8N3D4 1523 aa12.34□□□□□ -0.43
SMG1-209ENST00000563836 CCNYL3P0C7X3 344 aa12.34□□□□□ -0.43
SMG1-209ENST00000563836 TSC1Q92574 1164 aa12.34□□□□□ -0.43
SMG1-209ENST00000563836 PRKD2Q9BZL6 878 aa12.34□□□□□ -0.43
SMG1-209ENST00000563836 V9GY48 417 aaPredicted RBP12.34□□□□□ -0.43
SMG1-209ENST00000563836 UACAQ9BZF9 1416 aa12.34□□□□□ -0.43
SMG1-209ENST00000563836 LIAT1Q6ZQX7 453 aa12.33□□□□□ -0.44
SMG1-209ENST00000563836 EVA1BQ9NVM1 165 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms