RNA–Protein interactions for RNA: ENST00000563835.1

PTPN9-203, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 5

Gene PTPN9, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-203ENST00000563835 NRKQ7Z2Y5 1582 aa13.26□□□□□ -0.29
PTPN9-203ENST00000563835 RALGAPBQ86X10 1494 aa13.26□□□□□ -0.29
PTPN9-203ENST00000563835 NGDNQ8NEJ9 315 aaKnown RBP13.26□□□□□ -0.29
PTPN9-203ENST00000563835 BRWD3Q6RI45 1802 aa13.25□□□□□ -0.29
PTPN9-203ENST00000563835 TONSLQ96HA7 1378 aa13.25□□□□□ -0.29
PTPN9-203ENST00000563835 HAP1P54257 671 aaPredicted RBP13.25□□□□□ -0.29
PTPN9-203ENST00000563835 CABP2Q9NPB3 220 aa13.25□□□□□ -0.29
PTPN9-203ENST00000563835 TRPC5Q9UL62 973 aaPredicted RBP13.25□□□□□ -0.29
PTPN9-203ENST00000563835 AKAP12Q02952 1782 aa13.25□□□□□ -0.29
PTPN9-203ENST00000563835 ACEP12821 1306 aa13.24□□□□□ -0.29
PTPN9-203ENST00000563835 SRPK2P78362 688 aaKnown RBP13.24□□□□□ -0.29
PTPN9-203ENST00000563835 EP400Q96L91 3159 aa13.24□□□□□ -0.29
PTPN9-203ENST00000563835 PAK3O75914 559 aaPredicted RBP13.23□□□□□ -0.29
PTPN9-203ENST00000563835 PIK3C2AO00443 1686 aa13.22□□□□□ -0.29
PTPN9-203ENST00000563835 NUTM2GQ5VZR2 741 aa13.21□□□□□ -0.29
PTPN9-203ENST00000563835 UNC5CLQ8IV45 518 aa13.21□□□□□ -0.29
PTPN9-203ENST00000563835 UPF1Q92900 1129 aaKnown RBP eCLIP13.21□□□□□ -0.29
PTPN9-203ENST00000563835 CCDC61Q9Y6R9 512 aa13.21□□□□□ -0.29
PTPN9-203ENST00000563835 MON2Q7Z3U7 1717 aa13.2□□□□□ -0.3
PTPN9-203ENST00000563835 PLEKHG3A1L390 1219 aa13.2□□□□□ -0.3
PTPN9-203ENST00000563835 FAM83GA6ND36 823 aa13.2□□□□□ -0.3
PTPN9-203ENST00000563835 GJD4Q96KN9 370 aaPredicted RBP13.19□□□□□ -0.3
PTPN9-203ENST00000563835 USP6P35125 1406 aa13.19□□□□□ -0.3
PTPN9-203ENST00000563835 LMO7Q8WWI1 1683 aa13.18□□□□□ -0.3
PTPN9-203ENST00000563835 KIAA0232Q92628 1395 aa13.18□□□□□ -0.3
PTPN9-203ENST00000563835 EVC2Q86UK5 1308 aa13.17□□□□□ -0.3
PTPN9-203ENST00000563835 CARD11Q9BXL7 1154 aa13.17□□□□□ -0.3
PTPN9-203ENST00000563835 THSD7AQ9UPZ6 1657 aa13.16□□□□□ -0.3
PTPN9-203ENST00000563835 BTG4Q9NY30 223 aa13.16□□□□□ -0.3
PTPN9-203ENST00000563835 CABP1Q9NZU7 370 aa13.16□□□□□ -0.3
PTPN9-203ENST00000563835 SLIT3O75094 1523 aa13.16□□□□□ -0.3
PTPN9-203ENST00000563835 ATAD2Q6PL18 1390 aa13.16□□□□□ -0.3
PTPN9-203ENST00000563835 SBNO2Q9Y2G9 1366 aa13.16□□□□□ -0.3
PTPN9-203ENST00000563835 USP19O94966 1318 aa13.15□□□□□ -0.3
PTPN9-203ENST00000563835 SSH2Q76I76 1423 aa13.15□□□□□ -0.3
PTPN9-203ENST00000563835 VPS72Q15906 364 aa13.15□□□□□ -0.3
PTPN9-203ENST00000563835 CHRNA2Q15822 529 aa13.14□□□□□ -0.31
PTPN9-203ENST00000563835 ABTB2Q8N961 1025 aa13.14□□□□□ -0.31
PTPN9-203ENST00000563835 PRDM11Q9NQV5 511 aa13.14□□□□□ -0.31
PTPN9-203ENST00000563835 CCDC9Q9Y3X0 531 aaKnown RBP13.14□□□□□ -0.31
PTPN9-203ENST00000563835 CD163L1Q9NR16 1453 aa13.14□□□□□ -0.31
PTPN9-203ENST00000563835 CAMTA1Q9Y6Y1 1673 aa13.13□□□□□ -0.31
PTPN9-203ENST00000563835 ZC3H6P61129 1189 aaKnown RBP13.13□□□□□ -0.31
PTPN9-203ENST00000563835 RGPD5Q99666 1765 aa13.12□□□□□ -0.31
PTPN9-203ENST00000563835 USP54Q70EL1 1684 aa13.12□□□□□ -0.31
PTPN9-203ENST00000563835 CPSF1Q10570 1443 aaKnown RBP13.12□□□□□ -0.31
PTPN9-203ENST00000563835 COL18A1P39060 1754 aa13.12□□□□□ -0.31
PTPN9-203ENST00000563835 WNK3Q9BYP7 1800 aa13.11□□□□□ -0.31
PTPN9-203ENST00000563835 PCGF6Q9BYE7 350 aa13.11□□□□□ -0.31
PTPN9-203ENST00000563835 CPDO75976 1380 aa13.1□□□□□ -0.31
PTPN9-203ENST00000563835 SEPT12Q8IYM1 358 aa13.1□□□□□ -0.31
PTPN9-203ENST00000563835 BRD4O60885 1362 aaPredicted RBP13.09□□□□□ -0.31
PTPN9-203ENST00000563835 NFAT5O94916 1531 aa13.09□□□□□ -0.31
PTPN9-203ENST00000563835 FAM98CQ17RN3 349 aaKnown RBP13.09□□□□□ -0.31
PTPN9-203ENST00000563835 STRN4Q9NRL3 753 aa13.09□□□□□ -0.31
PTPN9-203ENST00000563835 LTN1O94822 1766 aa13.09□□□□□ -0.31
PTPN9-203ENST00000563835 COL5A2P05997 1499 aaPredicted RBP13.09□□□□□ -0.31
PTPN9-203ENST00000563835 SPATA31A5Q5VU36 1347 aa13.09□□□□□ -0.31
PTPN9-203ENST00000563835 SPATA31A7Q8IWB4 1347 aa13.09□□□□□ -0.31
PTPN9-203ENST00000563835 KTN1Q86UP2 1357 aaKnown RBP13.08□□□□□ -0.31
PTPN9-203ENST00000563835 A0A0G2JS52 829 aa13.08□□□□□ -0.32
PTPN9-203ENST00000563835 MYT1Q01538 1121 aa13.08□□□□□ -0.32
PTPN9-203ENST00000563835 NLRP13Q86W25 1043 aa13.08□□□□□ -0.32
PTPN9-203ENST00000563835 TESK2Q96S53 571 aa13.08□□□□□ -0.32
PTPN9-203ENST00000563835 TTC21BQ7Z4L5 1316 aa13.08□□□□□ -0.32
PTPN9-203ENST00000563835 TNS1Q9HBL0 1735 aaKnown RBP13.08□□□□□ -0.32
PTPN9-203ENST00000563835 ZBTB7CA1YPR0 619 aa13.07□□□□□ -0.32
PTPN9-203ENST00000563835 ONECUT3O60422 494 aaPredicted RBP13.07□□□□□ -0.32
PTPN9-203ENST00000563835 GCP02774 474 aa13.07□□□□□ -0.32
PTPN9-203ENST00000563835 NLRP6P59044 892 aa13.07□□□□□ -0.32
PTPN9-203ENST00000563835 MYOM1P52179 1685 aa13.07□□□□□ -0.32
PTPN9-203ENST00000563835 A0A1W2PP64 1363 aa13.07□□□□□ -0.32
PTPN9-203ENST00000563835 USP47Q96K76 1375 aa13.07□□□□□ -0.32
PTPN9-203ENST00000563835 RGPD1P0DJD0 1748 aa13.06□□□□□ -0.32
PTPN9-203ENST00000563835 ST20-MTHFSA0A0A6YYL1 179 aa13.06□□□□□ -0.32
PTPN9-203ENST00000563835 SPATA31A1Q5TZJ5 1347 aa13.06□□□□□ -0.32
PTPN9-203ENST00000563835 LRRC37A3O60309 1634 aa13.06□□□□□ -0.32
PTPN9-203ENST00000563835 PARP4Q9UKK3 1724 aaKnown RBP13.05□□□□□ -0.32
PTPN9-203ENST00000563835 SOX12O15370 315 aa13.05□□□□□ -0.32
PTPN9-203ENST00000563835 FAM182BQ5T319 152 aa13.05□□□□□ -0.32
PTPN9-203ENST00000563835 LARP1Q6PKG0 1096 aaKnown RBP13.05□□□□□ -0.32
PTPN9-203ENST00000563835 KRT27Q7Z3Y8 459 aa13.05□□□□□ -0.32
PTPN9-203ENST00000563835 USP35Q9P2H5 1018 aa13.05□□□□□ -0.32
PTPN9-203ENST00000563835 ZRANB1Q9UGI0 708 aa13.05□□□□□ -0.32
PTPN9-203ENST00000563835 BLMP54132 1417 aaPredicted RBP13.05□□□□□ -0.32
PTPN9-203ENST00000563835 TMC1Q8TDI8 760 aa13.04□□□□□ -0.32
PTPN9-203ENST00000563835 SLC12A5Q9H2X9 1139 aa13.04□□□□□ -0.32
PTPN9-203ENST00000563835 TTC21AQ8NDW8 1320 aa13.04□□□□□ -0.32
PTPN9-203ENST00000563835 NME9Q86XW9 330 aa13.03□□□□□ -0.32
PTPN9-203ENST00000563835 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.03□□□□□ -0.32
PTPN9-203ENST00000563835 ZNF692Q9BU19 519 aaPredicted RBP13.03□□□□□ -0.32
PTPN9-203ENST00000563835 EDC4Q6P2E9 1401 aaKnown RBP13.03□□□□□ -0.32
PTPN9-203ENST00000563835 AATKQ6ZMQ8 1374 aa13.02□□□□□ -0.33
PTPN9-203ENST00000563835 KIF20BQ96Q89 1820 aa13.02□□□□□ -0.33
PTPN9-203ENST00000563835 EVA1CP58658 441 aa13.01□□□□□ -0.33
PTPN9-203ENST00000563835 CLSPNQ9HAW4 1339 aa13.01□□□□□ -0.33
PTPN9-203ENST00000563835 OVOS2A0A0J9YW53 1432 aa13.01□□□□□ -0.33
PTPN9-203ENST00000563835 CRB1P82279 1406 aa13.01□□□□□ -0.33
PTPN9-203ENST00000563835 OVOS2Q6IE36 1432 aa13.01□□□□□ -0.33
PTPN9-203ENST00000563835 ABCC6O95255 1503 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms