RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 AKAP12Q02952 1782 aa20.2■□□□□ 0.82
SMPD3-204ENST00000563396 TONSLQ96HA7 1378 aa20.2■□□□□ 0.82
SMPD3-204ENST00000563396 PPIP5K1Q6PFW1 1433 aa20.19■□□□□ 0.82
SMPD3-204ENST00000563396 PLEKHG3A1L390 1219 aa20.19■□□□□ 0.82
SMPD3-204ENST00000563396 NBPF8Q3BBV2 869 aa20.19■□□□□ 0.82
SMPD3-204ENST00000563396 NGDNQ8NEJ9 315 aaKnown RBP20.19■□□□□ 0.82
SMPD3-204ENST00000563396 CABLES1Q8TDN4 633 aa20.17■□□□□ 0.82
SMPD3-204ENST00000563396 ACEP12821 1306 aa20.16■□□□□ 0.82
SMPD3-204ENST00000563396 BRD4O60885 1362 aaPredicted RBP20.16■□□□□ 0.82
SMPD3-204ENST00000563396 LMOD2Q6P5Q4 547 aa20.15■□□□□ 0.82
SMPD3-204ENST00000563396 UNC5CLQ8IV45 518 aa20.15■□□□□ 0.82
SMPD3-204ENST00000563396 BRWD3Q6RI45 1802 aa20.14■□□□□ 0.81
SMPD3-204ENST00000563396 MON2Q7Z3U7 1717 aa20.14■□□□□ 0.81
SMPD3-204ENST00000563396 PIK3C2AO00443 1686 aa20.14■□□□□ 0.81
SMPD3-204ENST00000563396 HAP1P54257 671 aaPredicted RBP20.14■□□□□ 0.81
SMPD3-204ENST00000563396 EP400Q96L91 3159 aa20.14■□□□□ 0.81
SMPD3-204ENST00000563396 USP6P35125 1406 aa20.13■□□□□ 0.81
SMPD3-204ENST00000563396 SRPK2P78362 688 aaKnown RBP20.13■□□□□ 0.81
SMPD3-204ENST00000563396 UPF1Q92900 1129 aaKnown RBP eCLIP20.13■□□□□ 0.81
SMPD3-204ENST00000563396 LMO7Q8WWI1 1683 aa20.13■□□□□ 0.81
SMPD3-204ENST00000563396 GJD4Q96KN9 370 aaPredicted RBP20.12■□□□□ 0.81
SMPD3-204ENST00000563396 CABP2Q9NPB3 220 aa20.12■□□□□ 0.81
SMPD3-204ENST00000563396 SSH2Q76I76 1423 aa20.11■□□□□ 0.81
SMPD3-204ENST00000563396 EVC2Q86UK5 1308 aa20.11■□□□□ 0.81
SMPD3-204ENST00000563396 ATAD2Q6PL18 1390 aa20.1■□□□□ 0.81
SMPD3-204ENST00000563396 USP54Q70EL1 1684 aa20.1■□□□□ 0.81
SMPD3-204ENST00000563396 USP19O94966 1318 aa20.1■□□□□ 0.81
SMPD3-204ENST00000563396 SLIT3O75094 1523 aa20.1■□□□□ 0.81
SMPD3-204ENST00000563396 PAK3O75914 559 aaPredicted RBP20.09■□□□□ 0.81
SMPD3-204ENST00000563396 VPS72Q15906 364 aa20.09■□□□□ 0.81
SMPD3-204ENST00000563396 THSD7AQ9UPZ6 1657 aa20.09■□□□□ 0.81
SMPD3-204ENST00000563396 FAM83GA6ND36 823 aa20.08■□□□□ 0.81
SMPD3-204ENST00000563396 CPSF1Q10570 1443 aaKnown RBP20.06■□□□□ 0.8
SMPD3-204ENST00000563396 CARD11Q9BXL7 1154 aa20.06■□□□□ 0.8
SMPD3-204ENST00000563396 CPDO75976 1380 aa20.06■□□□□ 0.8
SMPD3-204ENST00000563396 KIAA0232Q92628 1395 aa20.06■□□□□ 0.8
SMPD3-204ENST00000563396 PLEKHG5O94827 1062 aa20.05■□□□□ 0.8
SMPD3-204ENST00000563396 BTG4Q9NY30 223 aa20.03■□□□□ 0.8
SMPD3-204ENST00000563396 CABP1Q9NZU7 370 aa20.03■□□□□ 0.8
SMPD3-204ENST00000563396 CLSPNQ9HAW4 1339 aa20.02■□□□□ 0.8
SMPD3-204ENST00000563396 ONECUT3O60422 494 aaPredicted RBP20.02■□□□□ 0.8
SMPD3-204ENST00000563396 PRDM11Q9NQV5 511 aa20.02■□□□□ 0.8
SMPD3-204ENST00000563396 CD163L1Q9NR16 1453 aa20.02■□□□□ 0.8
SMPD3-204ENST00000563396 CAMTA1Q9Y6Y1 1673 aa20■□□□□ 0.79
SMPD3-204ENST00000563396 ABTB2Q8N961 1025 aa20■□□□□ 0.79
SMPD3-204ENST00000563396 COL18A1P39060 1754 aa20■□□□□ 0.79
SMPD3-204ENST00000563396 NFAT5O94916 1531 aa19.98■□□□□ 0.79
SMPD3-204ENST00000563396 NUTM2GQ5VZR2 741 aa19.98■□□□□ 0.79
SMPD3-204ENST00000563396 SPATA31A5Q5VU36 1347 aa19.98■□□□□ 0.79
SMPD3-204ENST00000563396 SPATA31A7Q8IWB4 1347 aa19.98■□□□□ 0.79
SMPD3-204ENST00000563396 WNK3Q9BYP7 1800 aa19.97■□□□□ 0.79
SMPD3-204ENST00000563396 ABCC6O95255 1503 aa19.97■□□□□ 0.79
SMPD3-204ENST00000563396 NLRP13Q86W25 1043 aa19.97■□□□□ 0.79
SMPD3-204ENST00000563396 COL5A2P05997 1499 aaPredicted RBP19.97■□□□□ 0.79
SMPD3-204ENST00000563396 SEPT12Q8IYM1 358 aa19.96■□□□□ 0.79
SMPD3-204ENST00000563396 ZNF692Q9BU19 519 aaPredicted RBP19.96■□□□□ 0.79
SMPD3-204ENST00000563396 TTC21AQ8NDW8 1320 aa19.96■□□□□ 0.79
SMPD3-204ENST00000563396 PUS7Q96PZ0 661 aaKnown RBP19.95■□□□□ 0.78
SMPD3-204ENST00000563396 TESK2Q96S53 571 aa19.95■□□□□ 0.78
SMPD3-204ENST00000563396 PARP4Q9UKK3 1724 aaKnown RBP19.95■□□□□ 0.78
SMPD3-204ENST00000563396 TTC21BQ7Z4L5 1316 aa19.95■□□□□ 0.78
SMPD3-204ENST00000563396 KTN1Q86UP2 1357 aaKnown RBP19.95■□□□□ 0.78
SMPD3-204ENST00000563396 GCP02774 474 aa19.94■□□□□ 0.78
SMPD3-204ENST00000563396 ZC3H6P61129 1189 aaKnown RBP19.94■□□□□ 0.78
SMPD3-204ENST00000563396 CHRNA2Q15822 529 aa19.94■□□□□ 0.78
SMPD3-204ENST00000563396 CCDC9Q9Y3X0 531 aaKnown RBP19.94■□□□□ 0.78
SMPD3-204ENST00000563396 NINLQ9Y2I6 1382 aa19.94■□□□□ 0.78
SMPD3-204ENST00000563396 BLMP54132 1417 aaPredicted RBP19.93■□□□□ 0.78
SMPD3-204ENST00000563396 RGPD1P0DJD0 1748 aa19.93■□□□□ 0.78
SMPD3-204ENST00000563396 TIMELESSQ9UNS1 1208 aa19.93■□□□□ 0.78
SMPD3-204ENST00000563396 SPATA31A1Q5TZJ5 1347 aa19.93■□□□□ 0.78
SMPD3-204ENST00000563396 TNS1Q9HBL0 1735 aaKnown RBP19.92■□□□□ 0.78
SMPD3-204ENST00000563396 AATKQ6ZMQ8 1374 aa19.92■□□□□ 0.78
SMPD3-204ENST00000563396 USP47Q96K76 1375 aa19.92■□□□□ 0.78
SMPD3-204ENST00000563396 EDC4Q6P2E9 1401 aaKnown RBP19.92■□□□□ 0.78
SMPD3-204ENST00000563396 USP31Q70CQ4 1352 aa19.91■□□□□ 0.78
SMPD3-204ENST00000563396 LTN1O94822 1766 aa19.9■□□□□ 0.78
SMPD3-204ENST00000563396 RGPD5Q99666 1765 aa19.9■□□□□ 0.78
SMPD3-204ENST00000563396 NLRP6P59044 892 aa19.9■□□□□ 0.78
SMPD3-204ENST00000563396 FAM98CQ17RN3 349 aaKnown RBP19.9■□□□□ 0.78
SMPD3-204ENST00000563396 CCDC125Q86Z20 511 aa19.9■□□□□ 0.78
SMPD3-204ENST00000563396 A0A1W2PP64 1363 aa19.9■□□□□ 0.78
SMPD3-204ENST00000563396 MYOM1P52179 1685 aa19.9■□□□□ 0.78
SMPD3-204ENST00000563396 ST20-MTHFSA0A0A6YYL1 179 aa19.89■□□□□ 0.77
SMPD3-204ENST00000563396 SLC24A1O60721 1099 aa19.89■□□□□ 0.77
SMPD3-204ENST00000563396 LRRC37A3O60309 1634 aa19.88■□□□□ 0.77
SMPD3-204ENST00000563396 OVOS2A0A0J9YW53 1432 aa19.88■□□□□ 0.77
SMPD3-204ENST00000563396 OVOS2Q6IE36 1432 aa19.88■□□□□ 0.77
SMPD3-204ENST00000563396 KRT27Q7Z3Y8 459 aa19.88■□□□□ 0.77
SMPD3-204ENST00000563396 CRB1P82279 1406 aa19.87■□□□□ 0.77
SMPD3-204ENST00000563396 STRN4Q9NRL3 753 aa19.86■□□□□ 0.77
SMPD3-204ENST00000563396 BARGINQ6ZT62 677 aa19.85■□□□□ 0.77
SMPD3-204ENST00000563396 KCNH5Q8NCM2 988 aa19.85■□□□□ 0.77
SMPD3-204ENST00000563396 PCGF6Q9BYE7 350 aa19.85■□□□□ 0.77
SMPD3-204ENST00000563396 PEAK1Q9H792 1746 aa19.83■□□□□ 0.77
SMPD3-204ENST00000563396 LARP1Q6PKG0 1096 aaKnown RBP19.83■□□□□ 0.77
SMPD3-204ENST00000563396 HDGFL2Q7Z4V5 671 aaPredicted RBP19.83■□□□□ 0.77
SMPD3-204ENST00000563396 ARHGEF25Q86VW2 580 aa19.83■□□□□ 0.77
SMPD3-204ENST00000563396 SLC12A5Q9H2X9 1139 aa19.83■□□□□ 0.77
SMPD3-204ENST00000563396 ANKRD36BQ8N2N9 1353 aa19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms