RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 KANK4Q5T7N3 995 aaPredicted RBP8.76□□□□□ -1.01
TSPAN3-209ENST00000560715 WDR62O43379 1518 aa8.76□□□□□ -1.01
TSPAN3-209ENST00000560715 CCDC144BQ3MJ40 725 aa8.75□□□□□ -1.01
TSPAN3-209ENST00000560715 RRBP1Q9P2E9 1410 aaKnown RBP8.75□□□□□ -1.01
TSPAN3-209ENST00000560715 CFAP43Q8NDM7 1665 aa8.75□□□□□ -1.01
TSPAN3-209ENST00000560715 SF3A1Q15459 793 aaKnown RBP8.75□□□□□ -1.01
TSPAN3-209ENST00000560715 LARGE2Q8N3Y3 721 aa8.75□□□□□ -1.01
TSPAN3-209ENST00000560715 GPHNQ9NQX3 736 aaPredicted RBP8.75□□□□□ -1.01
TSPAN3-209ENST00000560715 G3BP2Q9UN86 482 aaKnown RBP8.75□□□□□ -1.01
TSPAN3-209ENST00000560715 AQRO60306 1485 aaKnown RBP eCLIP8.74□□□□□ -1.01
TSPAN3-209ENST00000560715 SPDYE16A6NNV3 312 aaPredicted RBP8.74□□□□□ -1.01
TSPAN3-209ENST00000560715 RRP9O43818 475 aaKnown RBP8.74□□□□□ -1.01
TSPAN3-209ENST00000560715 ATG7O95352 703 aa8.74□□□□□ -1.01
TSPAN3-209ENST00000560715 USP17L8P0C7I0 530 aa8.74□□□□□ -1.01
TSPAN3-209ENST00000560715 PDE6BP35913 854 aa8.74□□□□□ -1.01
TSPAN3-209ENST00000560715 RBM10P98175 930 aaKnown RBP8.74□□□□□ -1.01
TSPAN3-209ENST00000560715 AAMPQ13685 434 aa8.74□□□□□ -1.01
TSPAN3-209ENST00000560715 SPACA7Q96KW9 195 aa8.74□□□□□ -1.01
TSPAN3-209ENST00000560715 SAMD9Q5K651 1589 aa8.74□□□□□ -1.01
TSPAN3-209ENST00000560715 TNNI2P48788 182 aa8.74□□□□□ -1.01
TSPAN3-209ENST00000560715 PCF11O94913 1555 aaKnown RBP8.73□□□□□ -1.01
TSPAN3-209ENST00000560715 SOWAHDA6NJG2 315 aa8.73□□□□□ -1.01
TSPAN3-209ENST00000560715 SOX12O15370 315 aa8.73□□□□□ -1.01
TSPAN3-209ENST00000560715 IFT140Q96RY7 1462 aa8.73□□□□□ -1.01
TSPAN3-209ENST00000560715 FYCO1Q9BQS8 1478 aa8.73□□□□□ -1.01
TSPAN3-209ENST00000560715 EPS8L1Q8TE68 723 aa8.73□□□□□ -1.01
TSPAN3-209ENST00000560715 GJD4Q96KN9 370 aaPredicted RBP8.72□□□□□ -1.01
TSPAN3-209ENST00000560715 LAS1LQ9Y4W2 734 aaKnown RBP8.72□□□□□ -1.01
TSPAN3-209ENST00000560715 HDLBPQ00341 1268 aaKnown RBP8.72□□□□□ -1.01
TSPAN3-209ENST00000560715 HSP90AA2PQ14568 343 aaPredicted RBP8.72□□□□□ -1.01
TSPAN3-209ENST00000560715 DMGDHQ9UI17 866 aaKnown RBP8.72□□□□□ -1.01
TSPAN3-209ENST00000560715 PCDHB15Q9Y5E8 787 aa8.72□□□□□ -1.01
TSPAN3-209ENST00000560715 CASKIN1Q8WXD9 1431 aa8.72□□□□□ -1.01
TSPAN3-209ENST00000560715 LRRC9Q6ZRR7 1453 aa8.72□□□□□ -1.01
TSPAN3-209ENST00000560715 ADAMTS12P58397 1594 aa8.72□□□□□ -1.01
TSPAN3-209ENST00000560715 hCG_2014768A0A024R1R8 64 aa8.71□□□□□ -1.01
TSPAN3-209ENST00000560715 ANAPC15P60006 121 aa8.71□□□□□ -1.01
TSPAN3-209ENST00000560715 DEPDC4Q8N2C3 294 aa8.71□□□□□ -1.01
TSPAN3-209ENST00000560715 TMA7Q9Y2S6 64 aaKnown RBP8.71□□□□□ -1.01
TSPAN3-209ENST00000560715 FMN1Q68DA7 1419 aa8.71□□□□□ -1.01
TSPAN3-209ENST00000560715 HNRNPUQ00839 825 aaKnown RBP eCLIP8.71□□□□□ -1.02
TSPAN3-209ENST00000560715 ZNF211Q13398 564 aaPredicted RBP8.71□□□□□ -1.02
TSPAN3-209ENST00000560715 FHOD3Q2V2M9 1422 aa8.71□□□□□ -1.02
TSPAN3-209ENST00000560715 GRIN2BQ13224 1484 aa8.71□□□□□ -1.02
TSPAN3-209ENST00000560715 LGR5O75473 907 aa8.71□□□□□ -1.02
TSPAN3-209ENST00000560715 TMEM259Q4ZIN3 620 aa8.71□□□□□ -1.02
TSPAN3-209ENST00000560715 NAP1L5Q96NT1 182 aaPredicted RBP8.71□□□□□ -1.02
TSPAN3-209ENST00000560715 DSG3P32926 999 aa8.7□□□□□ -1.02
TSPAN3-209ENST00000560715 TCEAL1Q15170 157 aa8.7□□□□□ -1.02
TSPAN3-209ENST00000560715 ZNF326Q5BKZ1 582 aaKnown RBP8.7□□□□□ -1.02
TSPAN3-209ENST00000560715 PIK3R5Q8WYR1 880 aa8.7□□□□□ -1.02
TSPAN3-209ENST00000560715 PIK3CDO00329 1044 aa8.7□□□□□ -1.02
TSPAN3-209ENST00000560715 ABL1P00519 1130 aa8.7□□□□□ -1.02
TSPAN3-209ENST00000560715 PRKAG2Q9UGJ0 569 aa8.7□□□□□ -1.02
TSPAN3-209ENST00000560715 CCNB3Q8WWL7 1395 aa8.69□□□□□ -1.02
TSPAN3-209ENST00000560715 MTMR3Q13615 1198 aa8.69□□□□□ -1.02
TSPAN3-209ENST00000560715 SLFNL1Q499Z3 407 aa8.69□□□□□ -1.02
TSPAN3-209ENST00000560715 CABLES1Q8TDN4 633 aa8.69□□□□□ -1.02
TSPAN3-209ENST00000560715 ZSWIM4Q9H7M6 989 aa8.69□□□□□ -1.02
TSPAN3-209ENST00000560715 RNF19AQ9NV58 838 aa8.69□□□□□ -1.02
TSPAN3-209ENST00000560715 DNAJA1P31689 397 aaKnown RBP8.69□□□□□ -1.02
TSPAN3-209ENST00000560715 NT5DC4Q86YG4 428 aa8.69□□□□□ -1.02
TSPAN3-209ENST00000560715 ZNF710Q8N1W2 664 aa8.69□□□□□ -1.02
TSPAN3-209ENST00000560715 FRAT1Q92837 279 aaPredicted RBP8.69□□□□□ -1.02
TSPAN3-209ENST00000560715 KAT6BQ8WYB5 2073 aa8.68□□□□□ -1.02
TSPAN3-209ENST00000560715 MAP3K9P80192 1104 aa8.68□□□□□ -1.02
TSPAN3-209ENST00000560715 PSME1Q06323 249 aa8.68□□□□□ -1.02
TSPAN3-209ENST00000560715 ALG2Q9H553 416 aa8.68□□□□□ -1.02
TSPAN3-209ENST00000560715 EGFLAMQ63HQ2 1017 aa8.68□□□□□ -1.02
TSPAN3-209ENST00000560715 PMM1Q92871 262 aa8.68□□□□□ -1.02
TSPAN3-209ENST00000560715 SNAPC4Q5SXM2 1469 aa8.68□□□□□ -1.02
TSPAN3-209ENST00000560715 PAX3P23760 479 aa8.67□□□□□ -1.02
TSPAN3-209ENST00000560715 PTPROQ16827 1216 aa8.67□□□□□ -1.02
TSPAN3-209ENST00000560715 RAD51AP2Q09MP3 1159 aa8.67□□□□□ -1.02
TSPAN3-209ENST00000560715 IQGAP2Q13576 1575 aa8.67□□□□□ -1.02
TSPAN3-209ENST00000560715 CHADLQ6NUI6 762 aa8.67□□□□□ -1.02
TSPAN3-209ENST00000560715 RIC3Q7Z5B4 369 aa8.67□□□□□ -1.02
TSPAN3-209ENST00000560715 FBXO33Q7Z6M2 555 aa8.67□□□□□ -1.02
TSPAN3-209ENST00000560715 PLCD4Q9BRC7 762 aa8.67□□□□□ -1.02
TSPAN3-209ENST00000560715 NPDC1Q9NQX5 325 aaPredicted RBP8.67□□□□□ -1.02
TSPAN3-209ENST00000560715 NDUFV2P19404 249 aa8.67□□□□□ -1.02
TSPAN3-209ENST00000560715 SSFA2P28290 1259 aa8.67□□□□□ -1.02
TSPAN3-209ENST00000560715 PPP2R2DQ66LE6 453 aa8.67□□□□□ -1.02
TSPAN3-209ENST00000560715 CNPY4Q8N129 248 aa8.67□□□□□ -1.02
TSPAN3-209ENST00000560715 TSC1Q92574 1164 aa8.67□□□□□ -1.02
TSPAN3-209ENST00000560715 HSP90AA1P07900 732 aaKnown RBP8.66□□□□□ -1.02
TSPAN3-209ENST00000560715 SDE2Q6IQ49 451 aa8.66□□□□□ -1.02
TSPAN3-209ENST00000560715 NOVA2Q9UNW9 492 aaKnown RBP8.66□□□□□ -1.02
TSPAN3-209ENST00000560715 MRPL42Q9Y6G3 142 aaKnown RBP8.66□□□□□ -1.02
TSPAN3-209ENST00000560715 CRTC2Q53ET0 693 aaPredicted RBP8.66□□□□□ -1.02
TSPAN3-209ENST00000560715 JAZF1Q86VZ6 243 aa8.66□□□□□ -1.02
TSPAN3-209ENST00000560715 EIF4G3O43432 1585 aaKnown RBP8.66□□□□□ -1.02
TSPAN3-209ENST00000560715 ZNF608Q9ULD9 1512 aaPredicted RBP8.65□□□□□ -1.02
TSPAN3-209ENST00000560715 LRRIQ1Q96JM4 1722 aa8.65□□□□□ -1.02
TSPAN3-209ENST00000560715 BMS1Q14692 1282 aaKnown RBP8.65□□□□□ -1.02
TSPAN3-209ENST00000560715 METTL3Q86U44 580 aaKnown RBP8.65□□□□□ -1.02
TSPAN3-209ENST00000560715 MOXD2PA6NHM9 499 aa8.65□□□□□ -1.03
TSPAN3-209ENST00000560715 IGBP1P78318 339 aa8.65□□□□□ -1.03
TSPAN3-209ENST00000560715 TLDC2A0PJX2 215 aa8.64□□□□□ -1.03
TSPAN3-209ENST00000560715 MAP3K13O43283 966 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 141 ms