RNA–Protein interactions for RNA: ENST00000559401.1

SNX1-207, Transcript of sorting nexin 1, humanhuman

TSL 2

Gene SNX1, Length 408 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-207ENST00000559401 PHRF1Q9P1Y6 1649 aaKnown RBP11.61□□□□□ -0.55
SNX1-207ENST00000559401 CRYBG1Q9Y4K1 1723 aa11.61□□□□□ -0.55
SNX1-207ENST00000559401 FNBP4Q8N3X1 1017 aaPredicted RBP11.61□□□□□ -0.55
SNX1-207ENST00000559401 POLR3AO14802 1390 aaPredicted RBP11.61□□□□□ -0.55
SNX1-207ENST00000559401 CDK12Q9NYV4 1490 aaPredicted RBP11.61□□□□□ -0.55
SNX1-207ENST00000559401 RGS12O14924 1447 aa11.6□□□□□ -0.55
SNX1-207ENST00000559401 NWD2Q9ULI1 1742 aa11.6□□□□□ -0.55
SNX1-207ENST00000559401 BCL9LQ86UU0 1499 aa11.6□□□□□ -0.55
SNX1-207ENST00000559401 PLEKHG3A1L390 1219 aa11.6□□□□□ -0.55
SNX1-207ENST00000559401 NUTM2GQ5VZR2 741 aa11.6□□□□□ -0.55
SNX1-207ENST00000559401 ATRNO75882 1429 aa11.6□□□□□ -0.55
SNX1-207ENST00000559401 COL14A1Q05707 1796 aaKnown RBP11.59□□□□□ -0.55
SNX1-207ENST00000559401 CCER1Q8TC90 406 aaPredicted RBP11.59□□□□□ -0.55
SNX1-207ENST00000559401 CABP1Q9NZU7 370 aa11.59□□□□□ -0.55
SNX1-207ENST00000559401 CCDC9Q9Y3X0 531 aaKnown RBP11.59□□□□□ -0.55
SNX1-207ENST00000559401 SLIT2O94813 1529 aa11.59□□□□□ -0.55
SNX1-207ENST00000559401 UNC5CLQ8IV45 518 aa11.58□□□□□ -0.56
SNX1-207ENST00000559401 ABTB2Q8N961 1025 aa11.58□□□□□ -0.56
SNX1-207ENST00000559401 AKAP12Q02952 1782 aa11.58□□□□□ -0.56
SNX1-207ENST00000559401 ATAD2Q6PL18 1390 aa11.57□□□□□ -0.56
SNX1-207ENST00000559401 SBNO2Q9Y2G9 1366 aa11.57□□□□□ -0.56
SNX1-207ENST00000559401 PRDM11Q9NQV5 511 aa11.57□□□□□ -0.56
SNX1-207ENST00000559401 USP6P35125 1406 aa11.57□□□□□ -0.56
SNX1-207ENST00000559401 NRAPQ86VF7 1730 aa11.57□□□□□ -0.56
SNX1-207ENST00000559401 CLSPNQ9HAW4 1339 aa11.57□□□□□ -0.56
SNX1-207ENST00000559401 FAM83GA6ND36 823 aa11.56□□□□□ -0.56
SNX1-207ENST00000559401 GLI3P10071 1580 aa11.56□□□□□ -0.56
SNX1-207ENST00000559401 NRKQ7Z2Y5 1582 aa11.56□□□□□ -0.56
SNX1-207ENST00000559401 GJD4Q96KN9 370 aaPredicted RBP11.56□□□□□ -0.56
SNX1-207ENST00000559401 ZC3H6P61129 1189 aaKnown RBP11.55□□□□□ -0.56
SNX1-207ENST00000559401 TMC1Q8TDI8 760 aa11.55□□□□□ -0.56
SNX1-207ENST00000559401 BTG4Q9NY30 223 aa11.55□□□□□ -0.56
SNX1-207ENST00000559401 PIK3C2AO00443 1686 aa11.55□□□□□ -0.56
SNX1-207ENST00000559401 BRD4O60885 1362 aaPredicted RBP11.54□□□□□ -0.56
SNX1-207ENST00000559401 KIAA0232Q92628 1395 aa11.54□□□□□ -0.56
SNX1-207ENST00000559401 A0A0G2JS52 829 aa11.54□□□□□ -0.56
SNX1-207ENST00000559401 ZBTB7CA1YPR0 619 aa11.54□□□□□ -0.56
SNX1-207ENST00000559401 MYT1Q01538 1121 aa11.54□□□□□ -0.56
SNX1-207ENST00000559401 CHRNA2Q15822 529 aa11.54□□□□□ -0.56
SNX1-207ENST00000559401 NLRP13Q86W25 1043 aa11.54□□□□□ -0.56
SNX1-207ENST00000559401 MON2Q7Z3U7 1717 aa11.54□□□□□ -0.56
SNX1-207ENST00000559401 KTN1Q86UP2 1357 aaKnown RBP11.54□□□□□ -0.56
SNX1-207ENST00000559401 USP47Q96K76 1375 aa11.54□□□□□ -0.56
SNX1-207ENST00000559401 ST20-MTHFSA0A0A6YYL1 179 aa11.53□□□□□ -0.56
SNX1-207ENST00000559401 NLRP6P59044 892 aa11.53□□□□□ -0.56
SNX1-207ENST00000559401 VPS72Q15906 364 aa11.53□□□□□ -0.56
SNX1-207ENST00000559401 ZNF692Q9BU19 519 aaPredicted RBP11.52□□□□□ -0.57
SNX1-207ENST00000559401 STRN4Q9NRL3 753 aa11.52□□□□□ -0.57
SNX1-207ENST00000559401 TIMELESSQ9UNS1 1208 aa11.52□□□□□ -0.57
SNX1-207ENST00000559401 BRWD3Q6RI45 1802 aa11.51□□□□□ -0.57
SNX1-207ENST00000559401 HDGFL2Q7Z4V5 671 aaPredicted RBP11.51□□□□□ -0.57
SNX1-207ENST00000559401 UPF1Q92900 1129 aaKnown RBP eCLIP11.51□□□□□ -0.57
SNX1-207ENST00000559401 USP19O94966 1318 aa11.51□□□□□ -0.57
SNX1-207ENST00000559401 SOX12O15370 315 aa11.5□□□□□ -0.57
SNX1-207ENST00000559401 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.5□□□□□ -0.57
SNX1-207ENST00000559401 TTC21BQ7Z4L5 1316 aa11.5□□□□□ -0.57
SNX1-207ENST00000559401 CPSF1Q10570 1443 aaKnown RBP11.5□□□□□ -0.57
SNX1-207ENST00000559401 SSH2Q76I76 1423 aa11.5□□□□□ -0.57
SNX1-207ENST00000559401 SLIT3O75094 1523 aa11.5□□□□□ -0.57
SNX1-207ENST00000559401 SLC24A1O60721 1099 aa11.49□□□□□ -0.57
SNX1-207ENST00000559401 GCP02774 474 aa11.49□□□□□ -0.57
SNX1-207ENST00000559401 EVA1CP58658 441 aa11.49□□□□□ -0.57
SNX1-207ENST00000559401 SEPT12Q8IYM1 358 aa11.49□□□□□ -0.57
SNX1-207ENST00000559401 TESK2Q96S53 571 aa11.49□□□□□ -0.57
SNX1-207ENST00000559401 TTC21AQ8NDW8 1320 aa11.49□□□□□ -0.57
SNX1-207ENST00000559401 LMO7Q8WWI1 1683 aa11.49□□□□□ -0.57
SNX1-207ENST00000559401 TMF1P82094 1093 aa11.48□□□□□ -0.57
SNX1-207ENST00000559401 FAM98CQ17RN3 349 aaKnown RBP11.48□□□□□ -0.57
SNX1-207ENST00000559401 SLC12A5Q9H2X9 1139 aa11.48□□□□□ -0.57
SNX1-207ENST00000559401 TERF2IPQ9NYB0 399 aa11.48□□□□□ -0.57
SNX1-207ENST00000559401 CPDO75976 1380 aa11.48□□□□□ -0.57
SNX1-207ENST00000559401 CAMTA1Q9Y6Y1 1673 aa11.47□□□□□ -0.57
SNX1-207ENST00000559401 CD163L1Q9NR16 1453 aa11.47□□□□□ -0.57
SNX1-207ENST00000559401 A0A1W2PP64 1363 aa11.47□□□□□ -0.57
SNX1-207ENST00000559401 USP35Q9P2H5 1018 aa11.47□□□□□ -0.57
SNX1-207ENST00000559401 EDC4Q6P2E9 1401 aaKnown RBP11.46□□□□□ -0.57
SNX1-207ENST00000559401 NINLQ9Y2I6 1382 aa11.46□□□□□ -0.57
SNX1-207ENST00000559401 SPATA31A5Q5VU36 1347 aa11.46□□□□□ -0.57
SNX1-207ENST00000559401 SPATA31A7Q8IWB4 1347 aa11.46□□□□□ -0.57
SNX1-207ENST00000559401 PUS7Q96PZ0 661 aaKnown RBP11.46□□□□□ -0.57
SNX1-207ENST00000559401 NME9Q86XW9 330 aa11.45□□□□□ -0.58
SNX1-207ENST00000559401 KCNH5Q8NCM2 988 aa11.45□□□□□ -0.58
SNX1-207ENST00000559401 RGPD5Q99666 1765 aa11.45□□□□□ -0.58
SNX1-207ENST00000559401 COL5A2P05997 1499 aaPredicted RBP11.44□□□□□ -0.58
SNX1-207ENST00000559401 LTN1O94822 1766 aa11.44□□□□□ -0.58
SNX1-207ENST00000559401 SPATA31A1Q5TZJ5 1347 aa11.44□□□□□ -0.58
SNX1-207ENST00000559401 USP54Q70EL1 1684 aa11.44□□□□□ -0.58
SNX1-207ENST00000559401 THSD7AQ9UPZ6 1657 aa11.44□□□□□ -0.58
SNX1-207ENST00000559401 CDCA8Q53HL2 280 aa11.44□□□□□ -0.58
SNX1-207ENST00000559401 KRT27Q7Z3Y8 459 aa11.44□□□□□ -0.58
SNX1-207ENST00000559401 ZRANB1Q9UGI0 708 aa11.44□□□□□ -0.58
SNX1-207ENST00000559401 LARP1Q6PKG0 1096 aaKnown RBP11.43□□□□□ -0.58
SNX1-207ENST00000559401 POLR3GLQ9BT43 218 aa11.43□□□□□ -0.58
SNX1-207ENST00000559401 NFAT5O94916 1531 aa11.43□□□□□ -0.58
SNX1-207ENST00000559401 COL18A1P39060 1754 aa11.43□□□□□ -0.58
SNX1-207ENST00000559401 MYOM1P52179 1685 aa11.43□□□□□ -0.58
SNX1-207ENST00000559401 AATKQ6ZMQ8 1374 aa11.42□□□□□ -0.58
SNX1-207ENST00000559401 ONECUT3O60422 494 aaPredicted RBP11.42□□□□□ -0.58
SNX1-207ENST00000559401 KIF20BQ96Q89 1820 aa11.42□□□□□ -0.58
SNX1-207ENST00000559401 USP31Q70CQ4 1352 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms