RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 ARHGEF11O15085 1522 aa11.81□□□□□ -0.52
RTF1-204ENST00000558117 TRIM32Q13049 653 aa11.8□□□□□ -0.52
RTF1-204ENST00000558117 CYB5RLQ6IPT4 315 aa11.8□□□□□ -0.52
RTF1-204ENST00000558117 PER1O15534 1290 aaPredicted RBP11.79□□□□□ -0.52
RTF1-204ENST00000558117 UNC93B1Q9H1C4 597 aa11.78□□□□□ -0.52
RTF1-204ENST00000558117 DCAF1Q9Y4B6 1507 aa11.77□□□□□ -0.52
RTF1-204ENST00000558117 CTDSPL2Q05D32 466 aa11.77□□□□□ -0.53
RTF1-204ENST00000558117 TMEM259Q4ZIN3 620 aa11.77□□□□□ -0.53
RTF1-204ENST00000558117 MAP10Q9P2G4 905 aa11.77□□□□□ -0.53
RTF1-204ENST00000558117 F12P00748 615 aaPredicted RBP11.76□□□□□ -0.53
RTF1-204ENST00000558117 PTCRAQ6ISU1 281 aaPredicted RBP11.76□□□□□ -0.53
RTF1-204ENST00000558117 USP17L8P0C7I0 530 aa11.75□□□□□ -0.53
RTF1-204ENST00000558117 IRX2Q9BZI1 471 aaPredicted RBP11.75□□□□□ -0.53
RTF1-204ENST00000558117 LRRN4Q8WUT4 740 aa11.73□□□□□ -0.53
RTF1-204ENST00000558117 WNT7BP56706 349 aa11.72□□□□□ -0.53
RTF1-204ENST00000558117 FOXC1Q12948 553 aa11.72□□□□□ -0.53
RTF1-204ENST00000558117 ARMC2Q8NEN0 867 aa11.72□□□□□ -0.53
RTF1-204ENST00000558117 KIF21AQ7Z4S6 1674 aa11.71□□□□□ -0.53
RTF1-204ENST00000558117 LINC01559Q495D7 138 aa11.71□□□□□ -0.53
RTF1-204ENST00000558117 PDZRN3Q9UPQ7 1066 aa11.71□□□□□ -0.53
RTF1-204ENST00000558117 PDS5BQ9NTI5 1447 aa11.7□□□□□ -0.54
RTF1-204ENST00000558117 LAMC3Q9Y6N6 1575 aa11.7□□□□□ -0.54
RTF1-204ENST00000558117 LAPTM4AQ15012 233 aa11.69□□□□□ -0.54
RTF1-204ENST00000558117 PNMA1Q8ND90 353 aa11.69□□□□□ -0.54
RTF1-204ENST00000558117 BAP1Q92560 729 aa11.69□□□□□ -0.54
RTF1-204ENST00000558117 ATAD2BQ9ULI0 1458 aa11.69□□□□□ -0.54
RTF1-204ENST00000558117 TNFRSF10AO00220 468 aa11.68□□□□□ -0.54
RTF1-204ENST00000558117 GFRA3O60609 400 aa11.68□□□□□ -0.54
RTF1-204ENST00000558117 NBPF14Q5TI25 921 aa11.68□□□□□ -0.54
RTF1-204ENST00000558117 WNT7AO00755 349 aa11.67□□□□□ -0.54
RTF1-204ENST00000558117 PRR20EP86478 221 aa11.67□□□□□ -0.54
RTF1-204ENST00000558117 PRR20CP86479 221 aa11.67□□□□□ -0.54
RTF1-204ENST00000558117 PRR20DP86480 221 aa11.67□□□□□ -0.54
RTF1-204ENST00000558117 PRR20BP86481 221 aa11.67□□□□□ -0.54
RTF1-204ENST00000558117 PRR20AP86496 221 aa11.67□□□□□ -0.54
RTF1-204ENST00000558117 NR6A1Q15406 480 aa11.67□□□□□ -0.54
RTF1-204ENST00000558117 ZNF511Q8NB15 262 aa11.67□□□□□ -0.54
RTF1-204ENST00000558117 BANK1Q8NDB2 785 aa11.67□□□□□ -0.54
RTF1-204ENST00000558117 SNRKQ9NRH2 765 aa11.67□□□□□ -0.54
RTF1-204ENST00000558117 WDR62O43379 1518 aa11.66□□□□□ -0.54
RTF1-204ENST00000558117 MRC2Q9UBG0 1479 aa11.66□□□□□ -0.54
RTF1-204ENST00000558117 GDF9O60383 454 aa11.66□□□□□ -0.54
RTF1-204ENST00000558117 SH3BP2P78314 561 aa11.66□□□□□ -0.54
RTF1-204ENST00000558117 SKOR1P84550 965 aa11.66□□□□□ -0.54
RTF1-204ENST00000558117 EHBP1Q8NDI1 1231 aa11.66□□□□□ -0.54
RTF1-204ENST00000558117 HMX1Q9NP08 348 aaPredicted RBP11.66□□□□□ -0.54
RTF1-204ENST00000558117 ZCCHC6Q5VYS8 1495 aaKnown RBP11.65□□□□□ -0.54
RTF1-204ENST00000558117 APBB1O00213 710 aa11.65□□□□□ -0.54
RTF1-204ENST00000558117 NRG2O14511 850 aaPredicted RBP11.65□□□□□ -0.54
RTF1-204ENST00000558117 RC3H1Q5TC82 1133 aaKnown RBP11.65□□□□□ -0.54
RTF1-204ENST00000558117 PKD2L1Q9P0L9 805 aa11.65□□□□□ -0.54
RTF1-204ENST00000558117 ARAP1Q96P48 1450 aa11.64□□□□□ -0.55
RTF1-204ENST00000558117 AGERQ15109 404 aa11.64□□□□□ -0.55
RTF1-204ENST00000558117 TRIM67Q6ZTA4 783 aa11.64□□□□□ -0.55
RTF1-204ENST00000558117 HMGXB3Q12766 1538 aa11.64□□□□□ -0.55
RTF1-204ENST00000558117 CYP4X1Q8N118 509 aa11.63□□□□□ -0.55
RTF1-204ENST00000558117 EPS8L1Q8TE68 723 aa11.63□□□□□ -0.55
RTF1-204ENST00000558117 GPKOWQ92917 476 aaPredicted RBP eCLIP11.63□□□□□ -0.55
RTF1-204ENST00000558117 MRGPRX2Q96LB1 330 aa11.63□□□□□ -0.55
RTF1-204ENST00000558117 FKBPLQ9UIM3 349 aa11.63□□□□□ -0.55
RTF1-204ENST00000558117 ZC3H4Q9UPT8 1303 aaKnown RBP11.61□□□□□ -0.55
RTF1-204ENST00000558117 TTC24A2A3L6 582 aaPredicted RBP11.61□□□□□ -0.55
RTF1-204ENST00000558117 BPHLQ86WA6 291 aaPredicted RBP11.61□□□□□ -0.55
RTF1-204ENST00000558117 MTMR14Q8NCE2 650 aa11.61□□□□□ -0.55
RTF1-204ENST00000558117 GTF3C3Q9Y5Q9 886 aa11.61□□□□□ -0.55
RTF1-204ENST00000558117 VARSP26640 1264 aaKnown RBP11.59□□□□□ -0.55
RTF1-204ENST00000558117 FOXJ1Q92949 421 aa11.59□□□□□ -0.55
RTF1-204ENST00000558117 TRIM34Q9BYJ4 488 aa11.59□□□□□ -0.55
RTF1-204ENST00000558117 SOCS7O14512 581 aa11.58□□□□□ -0.56
RTF1-204ENST00000558117 SNIP1Q8TAD8 396 aaKnown RBP11.58□□□□□ -0.56
RTF1-204ENST00000558117 GJD4Q96KN9 370 aaPredicted RBP11.58□□□□□ -0.56
RTF1-204ENST00000558117 MAGEB6P1A0A0J9YX57 407 aa11.57□□□□□ -0.56
RTF1-204ENST00000558117 FAM187AA6NFU0 413 aa11.57□□□□□ -0.56
RTF1-204ENST00000558117 MCM6Q14566 821 aa11.57□□□□□ -0.56
RTF1-204ENST00000558117 Q6ZNB5 142 aa11.57□□□□□ -0.56
RTF1-204ENST00000558117 FAM174AQ8TBP5 190 aa11.57□□□□□ -0.56
RTF1-204ENST00000558117 PRM3Q9NNZ6 103 aa11.57□□□□□ -0.56
RTF1-204ENST00000558117 PKDCCQ504Y2 493 aa11.56□□□□□ -0.56
RTF1-204ENST00000558117 PDXDC2PQ6P474 469 aa11.56□□□□□ -0.56
RTF1-204ENST00000558117 TOR4AQ9NXH8 423 aa11.56□□□□□ -0.56
RTF1-204ENST00000558117 ARHGAP9Q9BRR9 750 aa11.55□□□□□ -0.56
RTF1-204ENST00000558117 CARD14Q9BXL6 1004 aa11.55□□□□□ -0.56
RTF1-204ENST00000558117 NDUFB9Q9Y6M9 179 aa11.55□□□□□ -0.56
RTF1-204ENST00000558117 PTK2Q05397 1052 aa11.54□□□□□ -0.56
RTF1-204ENST00000558117 SH3BP5LQ7L8J4 393 aa11.54□□□□□ -0.56
RTF1-204ENST00000558117 ALDH1A1P00352 501 aa11.53□□□□□ -0.56
RTF1-204ENST00000558117 DGAT1O75907 488 aa11.52□□□□□ -0.57
RTF1-204ENST00000558117 FLIIQ13045 1269 aa11.52□□□□□ -0.57
RTF1-204ENST00000558117 SH3RF1Q7Z6J0 888 aa11.52□□□□□ -0.57
RTF1-204ENST00000558117 ZBTB33Q86T24 672 aa11.52□□□□□ -0.57
RTF1-204ENST00000558117 GPSM3Q9Y4H4 160 aa11.52□□□□□ -0.57
RTF1-204ENST00000558117 TLL2Q9Y6L7 1015 aa11.52□□□□□ -0.57
RTF1-204ENST00000558117 WASF2Q9Y6W5 498 aa11.52□□□□□ -0.57
RTF1-204ENST00000558117 C4orf48Q5BLP8 95 aa11.51□□□□□ -0.57
RTF1-204ENST00000558117 SIAH2O43255 324 aa11.5□□□□□ -0.57
RTF1-204ENST00000558117 ARID5BQ14865 1188 aa11.5□□□□□ -0.57
RTF1-204ENST00000558117 J3QL48 77 aa11.49□□□□□ -0.57
RTF1-204ENST00000558117 GPR37L1O60883 481 aa11.48□□□□□ -0.57
RTF1-204ENST00000558117 SLC10A4Q96EP9 437 aa11.48□□□□□ -0.57
RTF1-204ENST00000558117 C1QTNF2Q9BXJ5 285 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms