RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 PRAM1Q96QH2 718 aa12.24□□□□□ -0.45
CCDC88C-214ENST00000557507 MPHOSPH9Q99550 1183 aa12.24□□□□□ -0.45
CCDC88C-214ENST00000557507 TOPAZ1Q8N9V7 1692 aa12.23□□□□□ -0.45
CCDC88C-214ENST00000557507 PMFBP1Q8TBY8 1022 aa12.23□□□□□ -0.45
CCDC88C-214ENST00000557507 FAM182BQ5T319 152 aa12.22□□□□□ -0.45
CCDC88C-214ENST00000557507 BTG4Q9NY30 223 aa12.22□□□□□ -0.45
CCDC88C-214ENST00000557507 PRR36Q9H6K5 1346 aa12.21□□□□□ -0.45
CCDC88C-214ENST00000557507 EN1Q05925 392 aaPredicted RBP12.21□□□□□ -0.45
CCDC88C-214ENST00000557507 SPATA31A5Q5VU36 1347 aa12.2□□□□□ -0.46
CCDC88C-214ENST00000557507 SPATA31A7Q8IWB4 1347 aa12.2□□□□□ -0.46
CCDC88C-214ENST00000557507 ACIN1Q9UKV3 1341 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-214ENST00000557507 NRKQ7Z2Y5 1582 aa12.19□□□□□ -0.46
CCDC88C-214ENST00000557507 SBF2Q86WG5 1849 aa12.19□□□□□ -0.46
CCDC88C-214ENST00000557507 R3HDM1Q15032 1099 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-214ENST00000557507 HIRIP3Q9BW71 556 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-214ENST00000557507 ATP7BP35670 1465 aa12.19□□□□□ -0.46
CCDC88C-214ENST00000557507 LMO7Q8WWI1 1683 aa12.19□□□□□ -0.46
CCDC88C-214ENST00000557507 POGKQ9P215 609 aa12.18□□□□□ -0.46
CCDC88C-214ENST00000557507 WNK3Q9BYP7 1800 aa12.18□□□□□ -0.46
CCDC88C-214ENST00000557507 GPRASP1Q5JY77 1395 aa12.18□□□□□ -0.46
CCDC88C-214ENST00000557507 PARP4Q9UKK3 1724 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-214ENST00000557507 MINK1Q8N4C8 1332 aaPredicted RBP12.17□□□□□ -0.46
CCDC88C-214ENST00000557507 EIF3AQ14152 1382 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-214ENST00000557507 EZH2Q15910 746 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-214ENST00000557507 RGPD3A6NKT7 1758 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-214ENST00000557507 RGPD4Q7Z3J3 1758 aa12.15□□□□□ -0.46
CCDC88C-214ENST00000557507 PRDM11Q9NQV5 511 aa12.15□□□□□ -0.46
CCDC88C-214ENST00000557507 TRAK1Q9UPV9 953 aa12.15□□□□□ -0.46
CCDC88C-214ENST00000557507 KIAA0232Q92628 1395 aa12.15□□□□□ -0.46
CCDC88C-214ENST00000557507 PEAK1Q9H792 1746 aa12.14□□□□□ -0.47
CCDC88C-214ENST00000557507 SPATA31A1Q5TZJ5 1347 aa12.14□□□□□ -0.47
CCDC88C-214ENST00000557507 CAMTA1Q9Y6Y1 1673 aa12.13□□□□□ -0.47
CCDC88C-214ENST00000557507 WASLO00401 505 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-214ENST00000557507 TRIM37O94972 964 aa12.13□□□□□ -0.47
CCDC88C-214ENST00000557507 CHRNA2Q15822 529 aa12.13□□□□□ -0.47
CCDC88C-214ENST00000557507 CAMKK2Q96RR4 588 aa12.13□□□□□ -0.47
CCDC88C-214ENST00000557507 AKAP12Q02952 1782 aa12.13□□□□□ -0.47
CCDC88C-214ENST00000557507 SSH2Q76I76 1423 aa12.12□□□□□ -0.47
CCDC88C-214ENST00000557507 LRRC37A3O60309 1634 aa12.12□□□□□ -0.47
CCDC88C-214ENST00000557507 PAK3O75914 559 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-214ENST00000557507 NGDNQ8NEJ9 315 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-214ENST00000557507 PARD3Q8TEW0 1356 aa12.12□□□□□ -0.47
CCDC88C-214ENST00000557507 CASZ1Q86V15 1759 aa12.12□□□□□ -0.47
CCDC88C-214ENST00000557507 KIAA1210Q9ULL0 1709 aa12.11□□□□□ -0.47
CCDC88C-214ENST00000557507 RGPD5Q99666 1765 aa12.11□□□□□ -0.47
CCDC88C-214ENST00000557507 STRN4Q9NRL3 753 aa12.11□□□□□ -0.47
CCDC88C-214ENST00000557507 FAM196AQ6ZSG2 479 aa12.1□□□□□ -0.47
CCDC88C-214ENST00000557507 POLR3AO14802 1390 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-214ENST00000557507 RAB3GAP2Q9H2M9 1393 aa12.08□□□□□ -0.48
CCDC88C-214ENST00000557507 COL18A1P39060 1754 aa12.08□□□□□ -0.48
CCDC88C-214ENST00000557507 QRICH2Q9H0J4 1663 aa12.08□□□□□ -0.48
CCDC88C-214ENST00000557507 APBA3O96018 575 aa12.08□□□□□ -0.48
CCDC88C-214ENST00000557507 ZC3H6P61129 1189 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-214ENST00000557507 NUTM2GQ5VZR2 741 aa12.08□□□□□ -0.48
CCDC88C-214ENST00000557507 USP35Q9P2H5 1018 aa12.08□□□□□ -0.48
CCDC88C-214ENST00000557507 MYOM1P52179 1685 aa12.07□□□□□ -0.48
CCDC88C-214ENST00000557507 NUDT16Q96DE0 195 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-214ENST00000557507 KDM2AQ9Y2K7 1162 aa12.07□□□□□ -0.48
CCDC88C-214ENST00000557507 COL5A2P05997 1499 aaPredicted RBP12.07□□□□□ -0.48
CCDC88C-214ENST00000557507 CHD4Q14839 1912 aa12.06□□□□□ -0.48
CCDC88C-214ENST00000557507 BARGINQ6ZT62 677 aa12.06□□□□□ -0.48
CCDC88C-214ENST00000557507 PIK3C2AO00443 1686 aa12.06□□□□□ -0.48
CCDC88C-214ENST00000557507 CPDO75976 1380 aa12.05□□□□□ -0.48
CCDC88C-214ENST00000557507 LARP1Q6PKG0 1096 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-214ENST00000557507 DCAF11Q8TEB1 546 aa12.05□□□□□ -0.48
CCDC88C-214ENST00000557507 USP19O94966 1318 aa12.05□□□□□ -0.48
CCDC88C-214ENST00000557507 ACEP12821 1306 aa12.05□□□□□ -0.48
CCDC88C-214ENST00000557507 YY1P25490 414 aa12.04□□□□□ -0.48
CCDC88C-214ENST00000557507 PDE3BQ13370 1112 aa12.04□□□□□ -0.48
CCDC88C-214ENST00000557507 SLIT3O75094 1523 aa12.03□□□□□ -0.48
CCDC88C-214ENST00000557507 TCP11L2Q8N4U5 519 aa12.03□□□□□ -0.48
CCDC88C-214ENST00000557507 CDK19Q9BWU1 502 aa12.03□□□□□ -0.48
CCDC88C-214ENST00000557507 KAT6BQ8WYB5 2073 aa12.02□□□□□ -0.48
CCDC88C-214ENST00000557507 EVA1CP58658 441 aa12.02□□□□□ -0.49
CCDC88C-214ENST00000557507 NINLQ9Y2I6 1382 aa12.02□□□□□ -0.49
CCDC88C-214ENST00000557507 OVOS2A0A0G2JMS6 1433 aa12.02□□□□□ -0.49
CCDC88C-214ENST00000557507 OVOS2A0A0J9YW53 1432 aa12.02□□□□□ -0.49
CCDC88C-214ENST00000557507 OVOS2Q6IE36 1432 aa12.02□□□□□ -0.49
CCDC88C-214ENST00000557507 NBPF8Q3BBV2 869 aa12.01□□□□□ -0.49
CCDC88C-214ENST00000557507 NBPF14Q5TI25 921 aa12.01□□□□□ -0.49
CCDC88C-214ENST00000557507 CRB1P82279 1406 aa12.01□□□□□ -0.49
CCDC88C-214ENST00000557507 PLEKHG3A1L390 1219 aa12□□□□□ -0.49
CCDC88C-214ENST00000557507 ABTB2Q8N961 1025 aa12□□□□□ -0.49
CCDC88C-214ENST00000557507 SPON1Q9HCB6 807 aa12□□□□□ -0.49
CCDC88C-214ENST00000557507 PPIP5K1Q6PFW1 1433 aa12□□□□□ -0.49
CCDC88C-214ENST00000557507 UTRNP46939 3433 aa11.99□□□□□ -0.49
CCDC88C-214ENST00000557507 KCNQ2O43526 872 aa11.99□□□□□ -0.49
CCDC88C-214ENST00000557507 ANO8Q9HCE9 1232 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-214ENST00000557507 PPP1R1BQ9UD71 204 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-214ENST00000557507 THRAP3Q9Y2W1 955 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-214ENST00000557507 CCDC61Q9Y6R9 512 aa11.99□□□□□ -0.49
CCDC88C-214ENST00000557507 NHSQ6T4R5 1651 aa11.98□□□□□ -0.49
CCDC88C-214ENST00000557507 USP6P35125 1406 aa11.97□□□□□ -0.49
CCDC88C-214ENST00000557507 GCP02774 474 aa11.97□□□□□ -0.49
CCDC88C-214ENST00000557507 PTF1AQ7RTS3 328 aa11.97□□□□□ -0.49
CCDC88C-214ENST00000557507 STAC3Q96MF2 364 aa11.97□□□□□ -0.49
CCDC88C-214ENST00000557507 BTAF1O14981 1849 aa11.97□□□□□ -0.49
CCDC88C-214ENST00000557507 LTN1O94822 1766 aa11.97□□□□□ -0.49
CCDC88C-214ENST00000557507 TRPM1Q7Z4N2 1603 aa11.97□□□□□ -0.49
CCDC88C-214ENST00000557507 PDGFDQ9GZP0 370 aaPredicted RBP11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms