RNA–Protein interactions for RNA: ENST00000553455.1

SYNE2-210, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2 BASIC

Gene SYNE2, Length 674 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-210ENST00000553455 EVA1BQ9NVM1 165 aa9.79□□□□□ -0.84
SYNE2-210ENST00000553455 FBXO45P0C2W1 286 aa9.78□□□□□ -0.84
SYNE2-210ENST00000553455 PNMA1Q8ND90 353 aa9.78□□□□□ -0.84
SYNE2-210ENST00000553455 CTHP32929 405 aa9.77□□□□□ -0.85
SYNE2-210ENST00000553455 NR1H3Q13133 447 aa9.77□□□□□ -0.85
SYNE2-210ENST00000553455 IL21Q9HBE4 155 aa9.77□□□□□ -0.85
SYNE2-210ENST00000553455 ZC3H4Q9UPT8 1303 aaKnown RBP9.77□□□□□ -0.85
SYNE2-210ENST00000553455 SOX11P35716 441 aa9.76□□□□□ -0.85
SYNE2-210ENST00000553455 KCNH2Q12809 1159 aa9.76□□□□□ -0.85
SYNE2-210ENST00000553455 UCN2Q96RP3 112 aa9.76□□□□□ -0.85
SYNE2-210ENST00000553455 ZBBXA8MT70 800 aa9.75□□□□□ -0.85
SYNE2-210ENST00000553455 MYT1LQ9UL68 1186 aa9.75□□□□□ -0.85
SYNE2-210ENST00000553455 CFAP70Q5T0N1 1121 aa9.74□□□□□ -0.85
SYNE2-210ENST00000553455 OCSTAMPQ9BR26 566 aa9.73□□□□□ -0.85
SYNE2-210ENST00000553455 PPP1R12CQ9BZL4 782 aa9.73□□□□□ -0.85
SYNE2-210ENST00000553455 SLC6A16Q9GZN6 736 aa9.73□□□□□ -0.85
SYNE2-210ENST00000553455 EIF4G2P78344 907 aaKnown RBP eCLIP9.72□□□□□ -0.85
SYNE2-210ENST00000553455 NKX2-3Q8TAU0 364 aa9.72□□□□□ -0.85
SYNE2-210ENST00000553455 SEMA3FQ13275 785 aa9.71□□□□□ -0.86
SYNE2-210ENST00000553455 PTCRAQ6ISU1 281 aaPredicted RBP9.71□□□□□ -0.86
SYNE2-210ENST00000553455 PALM3A6NDB9 673 aaPredicted RBP9.7□□□□□ -0.86
SYNE2-210ENST00000553455 SRPK2P78362 688 aaKnown RBP9.7□□□□□ -0.86
SYNE2-210ENST00000553455 PDXDC2PQ6P474 469 aa9.7□□□□□ -0.86
SYNE2-210ENST00000553455 ARMC2Q8NEN0 867 aa9.7□□□□□ -0.86
SYNE2-210ENST00000553455 GPKOWQ92917 476 aaPredicted RBP eCLIP9.7□□□□□ -0.86
SYNE2-210ENST00000553455 UNC93B1Q9H1C4 597 aa9.7□□□□□ -0.86
SYNE2-210ENST00000553455 PPP1R15AO75807 674 aaPredicted RBP9.69□□□□□ -0.86
SYNE2-210ENST00000553455 S1PR4O95977 384 aa9.69□□□□□ -0.86
SYNE2-210ENST00000553455 NBPF14Q5TI25 921 aa9.69□□□□□ -0.86
SYNE2-210ENST00000553455 GPSM3Q9Y4H4 160 aa9.69□□□□□ -0.86
SYNE2-210ENST00000553455 CCDC24Q8N4L8 307 aa9.68□□□□□ -0.86
SYNE2-210ENST00000553455 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.67□□□□□ -0.86
SYNE2-210ENST00000553455 RFX1P22670 979 aa9.67□□□□□ -0.86
SYNE2-210ENST00000553455 PTK2Q05397 1052 aa9.67□□□□□ -0.86
SYNE2-210ENST00000553455 TBC1D9Q6ZT07 1266 aa9.67□□□□□ -0.86
SYNE2-210ENST00000553455 RETREG2Q8NC44 543 aa9.67□□□□□ -0.86
SYNE2-210ENST00000553455 PBXIP1Q96AQ6 731 aa9.67□□□□□ -0.86
SYNE2-210ENST00000553455 TFIP11Q9UBB9 837 aaKnown RBP9.67□□□□□ -0.86
SYNE2-210ENST00000553455 SH3BP5LQ7L8J4 393 aa9.66□□□□□ -0.86
SYNE2-210ENST00000553455 FCF1Q9Y324 198 aaKnown RBP9.66□□□□□ -0.86
SYNE2-210ENST00000553455 MAFBQ9Y5Q3 323 aaPredicted RBP9.66□□□□□ -0.86
SYNE2-210ENST00000553455 PIK3CDO00329 1044 aa9.65□□□□□ -0.86
SYNE2-210ENST00000553455 ITGBL1O95965 494 aaPredicted RBP9.64□□□□□ -0.87
SYNE2-210ENST00000553455 PDIA4P13667 645 aaKnown RBP9.64□□□□□ -0.87
SYNE2-210ENST00000553455 LMOD1P29536 600 aaPredicted RBP9.64□□□□□ -0.87
SYNE2-210ENST00000553455 ATP9BO43861 1147 aa9.63□□□□□ -0.87
SYNE2-210ENST00000553455 SH3RF1Q7Z6J0 888 aa9.63□□□□□ -0.87
SYNE2-210ENST00000553455 ADAM32Q8TC27 787 aa9.63□□□□□ -0.87
SYNE2-210ENST00000553455 RNF166Q96A37 237 aaPredicted RBP9.63□□□□□ -0.87
SYNE2-210ENST00000553455 ARHGAP9Q9BRR9 750 aa9.63□□□□□ -0.87
SYNE2-210ENST00000553455 HCSTQ9UBK5 93 aa9.63□□□□□ -0.87
SYNE2-210ENST00000553455 FAM174AQ8TBP5 190 aa9.62□□□□□ -0.87
SYNE2-210ENST00000553455 BAP1Q92560 729 aa9.62□□□□□ -0.87
SYNE2-210ENST00000553455 TRAIPQ9BWF2 469 aa9.62□□□□□ -0.87
SYNE2-210ENST00000553455 TRIM26Q12899 539 aaPredicted RBP9.61□□□□□ -0.87
SYNE2-210ENST00000553455 SPNS2Q8IVW8 549 aa9.61□□□□□ -0.87
SYNE2-210ENST00000553455 NFATC2IPQ8NCF5 419 aa9.61□□□□□ -0.87
SYNE2-210ENST00000553455 CEP126Q9P2H0 1117 aa9.61□□□□□ -0.87
SYNE2-210ENST00000553455 PCDHB9Q9Y5E1 797 aa9.61□□□□□ -0.87
SYNE2-210ENST00000553455 PPEF1O14829 653 aaPredicted RBP9.6□□□□□ -0.87
SYNE2-210ENST00000553455 KCNC4Q03721 635 aa9.6□□□□□ -0.87
SYNE2-210ENST00000553455 LINC01559Q495D7 138 aa9.6□□□□□ -0.87
SYNE2-210ENST00000553455 C4orf48Q5BLP8 95 aa9.6□□□□□ -0.87
SYNE2-210ENST00000553455 PHTF2Q8N3S3 785 aa9.59□□□□□ -0.87
SYNE2-210ENST00000553455 ZNF511Q8NB15 262 aa9.59□□□□□ -0.87
SYNE2-210ENST00000553455 FOXJ1Q92949 421 aa9.59□□□□□ -0.87
SYNE2-210ENST00000553455 RNF223E7ERA6 249 aa9.58□□□□□ -0.88
SYNE2-210ENST00000553455 MCCD1P59942 119 aaPredicted RBP9.58□□□□□ -0.88
SYNE2-210ENST00000553455 PLA2G2CQ5R387 149 aa9.58□□□□□ -0.88
SYNE2-210ENST00000553455 ZBTB33Q86T24 672 aa9.58□□□□□ -0.88
SYNE2-210ENST00000553455 ZNF592Q92610 1267 aa9.58□□□□□ -0.88
SYNE2-210ENST00000553455 CARD14Q9BXL6 1004 aa9.58□□□□□ -0.88
SYNE2-210ENST00000553455 ACIN1Q9UKV3 1341 aaKnown RBP9.57□□□□□ -0.88
SYNE2-210ENST00000553455 MAGEB6P1A0A0J9YX57 407 aa9.57□□□□□ -0.88
SYNE2-210ENST00000553455 USP17L3A6NCW0 530 aa9.57□□□□□ -0.88
SYNE2-210ENST00000553455 USP17L4A6NCW7 530 aa9.57□□□□□ -0.88
SYNE2-210ENST00000553455 USP17L5A8MUK1 530 aa9.57□□□□□ -0.88
SYNE2-210ENST00000553455 SKIP12755 728 aa9.57□□□□□ -0.88
SYNE2-210ENST00000553455 ERFEQ4G0M1 354 aa9.57□□□□□ -0.88
SYNE2-210ENST00000553455 KANK4Q5T7N3 995 aaPredicted RBP9.57□□□□□ -0.88
SYNE2-210ENST00000553455 USP17L2Q6R6M4 530 aa9.57□□□□□ -0.88
SYNE2-210ENST00000553455 USP17L1Q7RTZ2 530 aa9.57□□□□□ -0.88
SYNE2-210ENST00000553455 PLEKHM2Q8IWE5 1019 aa9.57□□□□□ -0.88
SYNE2-210ENST00000553455 CHIC2Q9UKJ5 165 aa9.57□□□□□ -0.88
SYNE2-210ENST00000553455 ATG7O95352 703 aa9.56□□□□□ -0.88
SYNE2-210ENST00000553455 CDCA8Q53HL2 280 aa9.56□□□□□ -0.88
SYNE2-210ENST00000553455 BPHLQ86WA6 291 aaPredicted RBP9.56□□□□□ -0.88
SYNE2-210ENST00000553455 C1QTNF2Q9BXJ5 285 aa9.56□□□□□ -0.88
SYNE2-210ENST00000553455 SH3BP2P78314 561 aa9.55□□□□□ -0.88
SYNE2-210ENST00000553455 SLFNL1Q499Z3 407 aa9.55□□□□□ -0.88
SYNE2-210ENST00000553455 RNF135Q8IUD6 432 aa9.55□□□□□ -0.88
SYNE2-210ENST00000553455 ANKLE1Q8NAG6 615 aa9.55□□□□□ -0.88
SYNE2-210ENST00000553455 DZIP3Q86Y13 1208 aaKnown RBP9.54□□□□□ -0.88
SYNE2-210ENST00000553455 DEPDC4Q8N2C3 294 aa9.54□□□□□ -0.88
SYNE2-210ENST00000553455 TRIM32Q13049 653 aa9.53□□□□□ -0.88
SYNE2-210ENST00000553455 AGERQ15109 404 aa9.53□□□□□ -0.88
SYNE2-210ENST00000553455 PLPP7Q8NBV4 271 aa9.53□□□□□ -0.88
SYNE2-210ENST00000553455 USTQ9Y2C2 406 aa9.53□□□□□ -0.88
SYNE2-210ENST00000553455 NCOA4Q13772 614 aa9.52□□□□□ -0.89
SYNE2-210ENST00000553455 TSGA10IPQ3SY00 556 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms