RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 ATP9BO43861 1147 aa10.7□□□□□ -0.7
LIMA1-210ENST00000552045 CDCA8Q53HL2 280 aa10.7□□□□□ -0.7
LIMA1-210ENST00000552045 RGS22Q8NE09 1264 aa10.7□□□□□ -0.7
LIMA1-210ENST00000552045 SALL2Q9Y467 1007 aaPredicted RBP10.7□□□□□ -0.7
LIMA1-210ENST00000552045 FBXO45P0C2W1 286 aa10.69□□□□□ -0.7
LIMA1-210ENST00000552045 MFAP1P55081 439 aaKnown RBP10.69□□□□□ -0.7
LIMA1-210ENST00000552045 BRICD5Q6PL45 260 aa10.69□□□□□ -0.7
LIMA1-210ENST00000552045 ZBBXA8MT70 800 aa10.68□□□□□ -0.7
LIMA1-210ENST00000552045 ANKK1Q8NFD2 765 aa10.68□□□□□ -0.7
LIMA1-210ENST00000552045 FKBPLQ9UIM3 349 aa10.68□□□□□ -0.7
LIMA1-210ENST00000552045 TMEM88BA6NKF7 163 aa10.67□□□□□ -0.7
LIMA1-210ENST00000552045 F12P00748 615 aaPredicted RBP10.67□□□□□ -0.7
LIMA1-210ENST00000552045 ZC3H4Q9UPT8 1303 aaKnown RBP10.65□□□□□ -0.7
LIMA1-210ENST00000552045 SCUBE3Q8IX30 993 aa10.65□□□□□ -0.7
LIMA1-210ENST00000552045 WNT2BQ93097 391 aa10.65□□□□□ -0.7
LIMA1-210ENST00000552045 THAP11Q96EK4 314 aa10.65□□□□□ -0.7
LIMA1-210ENST00000552045 VRTNQ9H8Y1 702 aa10.65□□□□□ -0.7
LIMA1-210ENST00000552045 MTMR7Q9Y216 660 aa10.65□□□□□ -0.7
LIMA1-210ENST00000552045 SOWAHBA6NEL2 793 aa10.64□□□□□ -0.71
LIMA1-210ENST00000552045 FMNL1O95466 1100 aaPredicted RBP10.64□□□□□ -0.71
LIMA1-210ENST00000552045 APLP1P51693 650 aa10.64□□□□□ -0.71
LIMA1-210ENST00000552045 PPP4CP60510 307 aa10.64□□□□□ -0.71
LIMA1-210ENST00000552045 PTPRNQ16849 979 aa10.64□□□□□ -0.71
LIMA1-210ENST00000552045 KANK4Q5T7N3 995 aaPredicted RBP10.64□□□□□ -0.71
LIMA1-210ENST00000552045 NFATC2IPQ8NCF5 419 aa10.64□□□□□ -0.71
LIMA1-210ENST00000552045 MAP10Q9P2G4 905 aa10.64□□□□□ -0.71
LIMA1-210ENST00000552045 PIK3CDO00329 1044 aa10.63□□□□□ -0.71
LIMA1-210ENST00000552045 JUNDP17535 347 aa10.63□□□□□ -0.71
LIMA1-210ENST00000552045 NR1I2O75469 434 aa10.62□□□□□ -0.71
LIMA1-210ENST00000552045 HPS5Q9UPZ3 1129 aa10.62□□□□□ -0.71
LIMA1-210ENST00000552045 PCDHB3Q9Y5E6 796 aa10.62□□□□□ -0.71
LIMA1-210ENST00000552045 ELOAQ14241 798 aaKnown RBP10.61□□□□□ -0.71
LIMA1-210ENST00000552045 BCAMP50895 628 aa10.6□□□□□ -0.71
LIMA1-210ENST00000552045 TSR3Q9UJK0 312 aaKnown RBP10.6□□□□□ -0.71
LIMA1-210ENST00000552045 MYT1LQ9UL68 1186 aa10.6□□□□□ -0.71
LIMA1-210ENST00000552045 IVNS1ABPQ9Y6Y0 642 aa10.6□□□□□ -0.71
LIMA1-210ENST00000552045 CTHP32929 405 aa10.59□□□□□ -0.71
LIMA1-210ENST00000552045 THSD4Q6ZMP0 1018 aa10.59□□□□□ -0.71
LIMA1-210ENST00000552045 KCTD12Q96CX2 325 aaKnown RBP10.59□□□□□ -0.71
LIMA1-210ENST00000552045 USP17L3A6NCW0 530 aa10.58□□□□□ -0.72
LIMA1-210ENST00000552045 USP17L4A6NCW7 530 aa10.58□□□□□ -0.72
LIMA1-210ENST00000552045 SKIP12755 728 aa10.58□□□□□ -0.72
LIMA1-210ENST00000552045 USP17L2Q6R6M4 530 aa10.58□□□□□ -0.72
LIMA1-210ENST00000552045 USP17L1Q7RTZ2 530 aa10.58□□□□□ -0.72
LIMA1-210ENST00000552045 SPNS2Q8IVW8 549 aa10.58□□□□□ -0.72
LIMA1-210ENST00000552045 PLEKHM2Q8IWE5 1019 aa10.58□□□□□ -0.72
LIMA1-210ENST00000552045 USP17L5A8MUK1 530 aa10.57□□□□□ -0.72
LIMA1-210ENST00000552045 ZMIZ1Q9ULJ6 1067 aa10.57□□□□□ -0.72
LIMA1-210ENST00000552045 GPSM3Q9Y4H4 160 aa10.57□□□□□ -0.72
LIMA1-210ENST00000552045 CCNYL3P0C7X3 344 aa10.56□□□□□ -0.72
LIMA1-210ENST00000552045 MSS51Q4VC12 460 aa10.56□□□□□ -0.72
LIMA1-210ENST00000552045 FOXD4L5Q5VV16 416 aaPredicted RBP10.56□□□□□ -0.72
LIMA1-210ENST00000552045 ARMC2Q8NEN0 867 aa10.56□□□□□ -0.72
LIMA1-210ENST00000552045 FAM174AQ8TBP5 190 aa10.56□□□□□ -0.72
LIMA1-210ENST00000552045 FOXD4L4Q8WXT5 416 aaPredicted RBP10.56□□□□□ -0.72
LIMA1-210ENST00000552045 EVA1BQ9NVM1 165 aa10.56□□□□□ -0.72
LIMA1-210ENST00000552045 DXOO77932 396 aaKnown RBP10.55□□□□□ -0.72
LIMA1-210ENST00000552045 PTK2Q05397 1052 aa10.55□□□□□ -0.72
LIMA1-210ENST00000552045 TMEM164Q5U3C3 297 aa10.55□□□□□ -0.72
LIMA1-210ENST00000552045 B4GALNT3Q6L9W6 998 aa10.55□□□□□ -0.72
LIMA1-210ENST00000552045 PDXDC2PQ6P474 469 aa10.55□□□□□ -0.72
LIMA1-210ENST00000552045 ZNF592Q92610 1267 aa10.55□□□□□ -0.72
LIMA1-210ENST00000552045 GPKOWQ92917 476 aaPredicted RBP eCLIP10.55□□□□□ -0.72
LIMA1-210ENST00000552045 CEP126Q9P2H0 1117 aa10.55□□□□□ -0.72
LIMA1-210ENST00000552045 MCCD1P59942 119 aaPredicted RBP10.54□□□□□ -0.72
LIMA1-210ENST00000552045 KCNH2Q12809 1159 aa10.54□□□□□ -0.72
LIMA1-210ENST00000552045 DEPDC4Q8N2C3 294 aa10.54□□□□□ -0.72
LIMA1-210ENST00000552045 FAM160A2Q8N612 972 aaPredicted RBP10.54□□□□□ -0.72
LIMA1-210ENST00000552045 STK32AQ8WU08 396 aa10.54□□□□□ -0.72
LIMA1-210ENST00000552045 NUDT12Q9BQG2 462 aa10.54□□□□□ -0.72
LIMA1-210ENST00000552045 NOVA2Q9UNW9 492 aaKnown RBP10.54□□□□□ -0.72
LIMA1-210ENST00000552045 FAM196BA6NMK8 535 aa10.53□□□□□ -0.72
LIMA1-210ENST00000552045 MMP16P51512 607 aa10.53□□□□□ -0.72
LIMA1-210ENST00000552045 SND1Q7KZF4 910 aaKnown RBP eCLIP10.53□□□□□ -0.72
LIMA1-210ENST00000552045 SPSB2Q99619 263 aa10.53□□□□□ -0.72
LIMA1-210ENST00000552045 OCSTAMPQ9BR26 566 aa10.53□□□□□ -0.72
LIMA1-210ENST00000552045 GNEQ9Y223 722 aaKnown RBP10.53□□□□□ -0.72
LIMA1-210ENST00000552045 SLFNL1Q499Z3 407 aa10.52□□□□□ -0.73
LIMA1-210ENST00000552045 WBP1LQ9NX94 342 aa10.52□□□□□ -0.73
LIMA1-210ENST00000552045 MKRN1Q9UHC7 482 aaKnown RBP10.52□□□□□ -0.73
LIMA1-210ENST00000552045 CCDC27Q2M243 656 aa10.51□□□□□ -0.73
LIMA1-210ENST00000552045 NBPF14Q5TI25 921 aa10.51□□□□□ -0.73
LIMA1-210ENST00000552045 NYAP1Q6ZVC0 841 aa10.51□□□□□ -0.73
LIMA1-210ENST00000552045 PHTF2Q8N3S3 785 aa10.51□□□□□ -0.73
LIMA1-210ENST00000552045 RNF166Q96A37 237 aaPredicted RBP10.51□□□□□ -0.73
LIMA1-210ENST00000552045 PCDHB9Q9Y5E1 797 aa10.51□□□□□ -0.73
LIMA1-210ENST00000552045 USP17L15C9J2P7 530 aa10.5□□□□□ -0.73
LIMA1-210ENST00000552045 USP17L10C9JJH3 530 aa10.5□□□□□ -0.73
LIMA1-210ENST00000552045 USP17L13C9JLJ4 530 aa10.5□□□□□ -0.73
LIMA1-210ENST00000552045 USP17L12C9JPN9 530 aa10.5□□□□□ -0.73
LIMA1-210ENST00000552045 USP17L11C9JVI0 530 aa10.5□□□□□ -0.73
LIMA1-210ENST00000552045 USP17L21D6R901 530 aa10.5□□□□□ -0.73
LIMA1-210ENST00000552045 USP17L18D6R9N7 530 aa10.5□□□□□ -0.73
LIMA1-210ENST00000552045 USP17L22D6RA61 530 aa10.5□□□□□ -0.73
LIMA1-210ENST00000552045 USP17L17D6RBQ6 530 aa10.5□□□□□ -0.73
LIMA1-210ENST00000552045 USP17L19D6RCP7 530 aa10.5□□□□□ -0.73
LIMA1-210ENST00000552045 USP17L20D6RJB6 530 aa10.5□□□□□ -0.73
LIMA1-210ENST00000552045 USP17L24Q0WX57 530 aa10.5□□□□□ -0.73
LIMA1-210ENST00000552045 NCOA4Q13772 614 aa10.5□□□□□ -0.73
LIMA1-210ENST00000552045 CRTC2Q53ET0 693 aaPredicted RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms