RNA–Protein interactions for RNA: ENST00000544272.1

USP28-211, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 656 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-211ENST00000544272 PDE4CQ08493 712 aa8.53□□□□□ -1.04
USP28-211ENST00000544272 SEMA3FQ13275 785 aa8.53□□□□□ -1.04
USP28-211ENST00000544272 WBP1LQ9NX94 342 aa8.53□□□□□ -1.04
USP28-211ENST00000544272 TFIP11Q9UBB9 837 aaKnown RBP8.53□□□□□ -1.04
USP28-211ENST00000544272 ZBBXA8MT70 800 aa8.52□□□□□ -1.05
USP28-211ENST00000544272 DXOO77932 396 aaKnown RBP8.52□□□□□ -1.05
USP28-211ENST00000544272 FAM160A2Q8N612 972 aaPredicted RBP8.52□□□□□ -1.05
USP28-211ENST00000544272 MAP10Q9P2G4 905 aa8.52□□□□□ -1.05
USP28-211ENST00000544272 MMP16P51512 607 aa8.51□□□□□ -1.05
USP28-211ENST00000544272 POTEGQ6S5H5 508 aa8.51□□□□□ -1.05
USP28-211ENST00000544272 USTQ9Y2C2 406 aa8.51□□□□□ -1.05
USP28-211ENST00000544272 MAFBQ9Y5Q3 323 aaPredicted RBP8.51□□□□□ -1.05
USP28-211ENST00000544272 LMOD1P29536 600 aaPredicted RBP8.5□□□□□ -1.05
USP28-211ENST00000544272 THSD4Q6ZMP0 1018 aa8.5□□□□□ -1.05
USP28-211ENST00000544272 TBC1D9Q6ZT07 1266 aa8.5□□□□□ -1.05
USP28-211ENST00000544272 KRTAP3-3Q9BYR6 98 aa8.5□□□□□ -1.05
USP28-211ENST00000544272 KRTAP3-2Q9BYR7 98 aa8.5□□□□□ -1.05
USP28-211ENST00000544272 EVA1BQ9NVM1 165 aa8.5□□□□□ -1.05
USP28-211ENST00000544272 ATP9BO43861 1147 aa8.49□□□□□ -1.05
USP28-211ENST00000544272 CCNYL3P0C7X3 344 aa8.49□□□□□ -1.05
USP28-211ENST00000544272 SPSB2Q99619 263 aa8.49□□□□□ -1.05
USP28-211ENST00000544272 GPSM3Q9Y4H4 160 aa8.49□□□□□ -1.05
USP28-211ENST00000544272 ATG7O95352 703 aa8.48□□□□□ -1.05
USP28-211ENST00000544272 NFATC2IPQ8NCF5 419 aa8.48□□□□□ -1.05
USP28-211ENST00000544272 GPKOWQ92917 476 aaPredicted RBP eCLIP8.48□□□□□ -1.05
USP28-211ENST00000544272 KCNH2Q12809 1159 aa8.47□□□□□ -1.05
USP28-211ENST00000544272 NYAP1Q6ZVC0 841 aa8.47□□□□□ -1.05
USP28-211ENST00000544272 NUDT12Q9BQG2 462 aa8.47□□□□□ -1.05
USP28-211ENST00000544272 CSB-PGBD3P0DP91 1061 aa8.46□□□□□ -1.06
USP28-211ENST00000544272 PDXDC2PQ6P474 469 aa8.46□□□□□ -1.06
USP28-211ENST00000544272 AEBP1Q8IUX7 1158 aa8.46□□□□□ -1.06
USP28-211ENST00000544272 ARMC2Q8NEN0 867 aa8.46□□□□□ -1.06
USP28-211ENST00000544272 OCSTAMPQ9BR26 566 aa8.46□□□□□ -1.06
USP28-211ENST00000544272 PRDM9Q9NQV7 894 aa8.46□□□□□ -1.06
USP28-211ENST00000544272 ADH1BP00325 375 aa8.45□□□□□ -1.06
USP28-211ENST00000544272 CTHP32929 405 aa8.45□□□□□ -1.06
USP28-211ENST00000544272 COPS2P61201 443 aa8.45□□□□□ -1.06
USP28-211ENST00000544272 KANK4Q5T7N3 995 aaPredicted RBP8.45□□□□□ -1.06
USP28-211ENST00000544272 CCDC180Q9P1Z9 1646 aa8.44□□□□□ -1.06
USP28-211ENST00000544272 PIK3CDO00329 1044 aa8.44□□□□□ -1.06
USP28-211ENST00000544272 CCDC9Q9Y3X0 531 aaKnown RBP8.44□□□□□ -1.06
USP28-211ENST00000544272 TMEM88BA6NKF7 163 aa8.43□□□□□ -1.06
USP28-211ENST00000544272 ZPR1O75312 459 aa8.43□□□□□ -1.06
USP28-211ENST00000544272 BRD1O95696 1058 aa8.43□□□□□ -1.06
USP28-211ENST00000544272 MCCD1P59942 119 aaPredicted RBP8.43□□□□□ -1.06
USP28-211ENST00000544272 PTK2Q05397 1052 aa8.43□□□□□ -1.06
USP28-211ENST00000544272 PLEKHM2Q8IWE5 1019 aa8.43□□□□□ -1.06
USP28-211ENST00000544272 TLL1O43897 1013 aa8.42□□□□□ -1.06
USP28-211ENST00000544272 ELOAQ14241 798 aaKnown RBP8.42□□□□□ -1.06
USP28-211ENST00000544272 NBPF14Q5TI25 921 aa8.42□□□□□ -1.06
USP28-211ENST00000544272 PHTF2Q8N3S3 785 aa8.42□□□□□ -1.06
USP28-211ENST00000544272 FAM174AQ8TBP5 190 aa8.42□□□□□ -1.06
USP28-211ENST00000544272 ZNF592Q92610 1267 aa8.42□□□□□ -1.06
USP28-211ENST00000544272 KCNA1Q09470 495 aa8.41□□□□□ -1.06
USP28-211ENST00000544272 CDCA8Q53HL2 280 aa8.41□□□□□ -1.06
USP28-211ENST00000544272 KCTD12Q96CX2 325 aaKnown RBP8.41□□□□□ -1.06
USP28-211ENST00000544272 MTRQ99707 1265 aa8.41□□□□□ -1.06
USP28-211ENST00000544272 VRTNQ9H8Y1 702 aa8.41□□□□□ -1.06
USP28-211ENST00000544272 PCDH10Q9P2E7 1040 aa8.41□□□□□ -1.06
USP28-211ENST00000544272 CEP126Q9P2H0 1117 aa8.41□□□□□ -1.06
USP28-211ENST00000544272 MYT1LQ9UL68 1186 aa8.41□□□□□ -1.06
USP28-211ENST00000544272 USP17L3A6NCW0 530 aa8.4□□□□□ -1.06
USP28-211ENST00000544272 USP17L4A6NCW7 530 aa8.4□□□□□ -1.06
USP28-211ENST00000544272 USP17L5A8MUK1 530 aa8.4□□□□□ -1.06
USP28-211ENST00000544272 PATL2C9JE40 543 aaKnown RBP8.4□□□□□ -1.06
USP28-211ENST00000544272 TJAP1Q5JTD0 557 aa8.4□□□□□ -1.06
USP28-211ENST00000544272 USP17L2Q6R6M4 530 aa8.4□□□□□ -1.06
USP28-211ENST00000544272 SH3BP5LQ7L8J4 393 aa8.4□□□□□ -1.06
USP28-211ENST00000544272 USP17L1Q7RTZ2 530 aa8.4□□□□□ -1.06
USP28-211ENST00000544272 CHIC2Q9UKJ5 165 aa8.4□□□□□ -1.06
USP28-211ENST00000544272 CARNS1A5YM72 827 aa8.39□□□□□ -1.07
USP28-211ENST00000544272 SKIP12755 728 aa8.39□□□□□ -1.07
USP28-211ENST00000544272 PTCRAQ6ISU1 281 aaPredicted RBP8.39□□□□□ -1.07
USP28-211ENST00000544272 UNC93B1Q9H1C4 597 aa8.39□□□□□ -1.07
USP28-211ENST00000544272 ADAM32Q8TC27 787 aa8.38□□□□□ -1.07
USP28-211ENST00000544272 IL21Q9HBE4 155 aa8.38□□□□□ -1.07
USP28-211ENST00000544272 ZMIZ1Q9ULJ6 1067 aa8.38□□□□□ -1.07
USP28-211ENST00000544272 SH3RF1Q7Z6J0 888 aa8.37□□□□□ -1.07
USP28-211ENST00000544272 ARHGAP9Q9BRR9 750 aa8.37□□□□□ -1.07
USP28-211ENST00000544272 SLC6A16Q9GZN6 736 aa8.37□□□□□ -1.07
USP28-211ENST00000544272 PCDHB9Q9Y5E1 797 aa8.37□□□□□ -1.07
USP28-211ENST00000544272 FAM196BA6NMK8 535 aa8.36□□□□□ -1.07
USP28-211ENST00000544272 LZTS3O60299 673 aaPredicted RBP8.36□□□□□ -1.07
USP28-211ENST00000544272 SLFNL1Q499Z3 407 aa8.36□□□□□ -1.07
USP28-211ENST00000544272 ZNF516Q92618 1163 aa8.36□□□□□ -1.07
USP28-211ENST00000544272 GZF1Q9H116 711 aaPredicted RBP8.36□□□□□ -1.07
USP28-211ENST00000544272 NCOA4Q13772 614 aa8.34□□□□□ -1.07
USP28-211ENST00000544272 MAP7D1Q3KQU3 841 aa8.34□□□□□ -1.07
USP28-211ENST00000544272 TMEM164Q5U3C3 297 aa8.34□□□□□ -1.07
USP28-211ENST00000544272 TRAF7Q6Q0C0 670 aa8.34□□□□□ -1.07
USP28-211ENST00000544272 RNF135Q8IUD6 432 aa8.34□□□□□ -1.07
USP28-211ENST00000544272 CCDC24Q8N4L8 307 aa8.34□□□□□ -1.07
USP28-211ENST00000544272 PLPP7Q8NBV4 271 aa8.34□□□□□ -1.07
USP28-211ENST00000544272 MKRN1Q9UHC7 482 aaKnown RBP8.34□□□□□ -1.07
USP28-211ENST00000544272 PTK7Q13308 1070 aa8.33□□□□□ -1.08
USP28-211ENST00000544272 CRTC2Q53ET0 693 aaPredicted RBP8.33□□□□□ -1.08
USP28-211ENST00000544272 TMCO4Q5TGY1 634 aa8.33□□□□□ -1.08
USP28-211ENST00000544272 DEPDC4Q8N2C3 294 aa8.33□□□□□ -1.08
USP28-211ENST00000544272 STK32AQ8WU08 396 aa8.33□□□□□ -1.08
USP28-211ENST00000544272 NOVA2Q9UNW9 492 aaKnown RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms